# List of top-scoring protein chains for T0247.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1pj5A 830 7.25e-30 unknown_sccs -4066 c.3.1.2 -6031 d.16.1.5 -9251 unknown_sccs -10171 1nrkA 328 5.54e-16 unknown_sccs -4071 unknown_sccs -10176 1lnsA 763 1.97e+00 a.40.2.1 78101 b.18.1.13 78102 c.69.1.21 78103 1so5A 216 4.63e+00 1so6A 216 4.75e+00 1q6oA 216 6.56e+00 c.1.2.3 -5162 1so3A 216 6.81e+00 1so4A 216 7.10e+00 1vknA 351 7.89e+00 1c8sA 196 8.21e+00 1c3wA f.13.1.1 43410 1sozA 314 8.45e+00 1sotA 320 8.59e+00 1nsnL 218 9.64e+00 8fabA b.1.1.1 20070 b.1.1.2 21102 1c3wA 222 1.23e+01 1c3wA f.13.1.1 43405 1nhs 447 1.50e+01 1nhp c.3.1.5 30555 c.3.1.5 30556 d.87.1.1 40199 1q5iA 249 1.51e+01 f.13.1.1 -12073 1kxjA 205 1.69e+01 c.23.16.1 73153 1mwwA 128 1.75e+01 unknown_sccs -10451 1nhr 447 1.78e+01 1nhp c.3.1.5 30553 c.3.1.5 30554 d.87.1.1 40198 1k9vF 201 1.90e+01 c.23.16.1 68365 1npx 447 1.99e+01 1nhp c.3.1.5 30557 c.3.1.5 30558 d.87.1.1 40200 1nhq 447 2.02e+01 1nhp c.3.1.5 30551 c.3.1.5 30552 d.87.1.1 40197 1nhp 447 2.04e+01 1nhp c.3.1.5 30549 c.3.1.5 30550 d.87.1.1 40196 1c0aA 585 2.16e+01 1c0aA b.40.4.1 25246 d.74.4.1 39731 d.104.1.1 40767 1il2A 590 2.18e+01 b.40.4.1 66193 d.74.4.1 66194 d.104.1.1 66195 1pxsA 249 2.23e+01 f.13.1.1 -12067 1rwhA 757 2.26e+01 a.102.3.2 -1340 b.24.1.1 -3300 b.30.5.2 -3508 1rw9A 757 2.30e+01 a.102.3.2 -1335 b.24.1.1 -3295 b.30.5.2 -3503 1f8wA 447 2.45e+01 1nhp c.3.1.5 30561 c.3.1.5 30562 d.87.1.1 40202 1bxsA 501 2.70e+01 1bpwA c.82.1.1 35357 1jw3A 140 2.75e+01 d.208.1.1 67373 1pxrA 249 2.77e+01 f.13.1.1 -12065 1c8rA 249 2.93e+01 1c3wA f.13.1.1 43407 1q5jA 249 3.05e+01 f.13.1.1 -12075 1mgyA 249 3.10e+01 f.13.1.1 84959 1p8uA 249 3.15e+01 f.13.1.1 87983 1tk3A 728 3.17e+01 1pfqA 731 3.17e+01 b.70.3.1 88061 c.69.1.24 88062 1r9mA 733 3.18e+01 1j2eA 740 3.18e+01 b.70.3.1 -4635 c.69.1.24 -8321 1jv6A 249 3.18e+01 f.13.1.1 67346 1brrA 247 3.23e+01 1c3wA f.13.1.1 43421 1p8hA 249 3.24e+01 f.13.1.1 87944 1cwqA 248 3.25e+01 1c3wA f.13.1.1 43412 1qhjA 248 3.26e+01 1c3wA f.13.1.1 43409 1p8iA 249 3.33e+01 f.13.1.1 87945 1jtdB 273 3.42e+01 b.69.5.2 67265 1s51A 227 3.43e+01 f.13.1.1 -12077 1e0pA 228 3.46e+01 1c3wA f.13.1.1 43416 1s54A 227 3.46e+01 f.13.1.1 -12083 1mt0A 241 3.49e+01 c.37.1.12 85096 1r84A 232 3.63e+01 f.13.1.1 -12064 1kgbA 231 3.73e+01 f.13.1.1 68581 1gqfA 265 3.73e+01 c.17.1.1 65470 1okqA 394 3.73e+01 b.29.1.4 -3435 b.29.1.4 -3436 1oh3A 144 3.73e+01 1s53A 227 3.84e+01 f.13.1.1 -12081 1v5sA 126 3.85e+01 1m5wA 243 3.87e+01 c.1.24.1 84836 1ho1A 242 3.88e+01 1ho1A c.1.24.1 61097 1s1iA 217 3.90e+01 1i4oA 280 3.97e+01 1pauA c.17.1.1 61721