# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1pj5A 830 2.72e-39 unknown_sccs -4066 c.3.1.2 -6031 d.16.1.5 -9251 unknown_sccs -10171 1nrkA 328 5.80e-31 unknown_sccs -4071 unknown_sccs -10176 1g7sA 594 1.33e-01 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 1vjtA 483 8.12e-01 c.2.1.5 -5941 d.162.1.2 -11508 1chmA 401 1.38e+00 1chmA c.55.2.1 33545 d.127.1.1 41142 1jcfA 344 2.76e+00 c.55.1.1 62878 c.55.1.1 62879 1t2dA 322 3.31e+00 c.2.1.5 -5920 d.162.1.1 -11487 1gdoA 240 3.68e+00 1gdoA d.153.1.1 41804 1j6wA 175 3.96e+00 1j98A d.185.1.2 62663 1li4A 432 4.01e+00 c.2.1.4 84616 c.23.12.3 84617 1ko3A 230 4.19e+00 d.157.1.1 -11454 1m98A 317 4.51e+00 a.175.1.1 78866 d.17.4.6 78867 1opy 131 4.64e+00 1opy d.17.4.3 38113 1hrhA 136 4.87e+00 1rthA c.55.3.1 33577 1a7tA 232 5.10e+00 1a7tA d.157.1.1 42041 1jjeA 222 5.21e+00 1a7tA d.157.1.1 63117 1dmmA 131 5.82e+00 1opy d.17.4.3 38114 1jjtA 228 5.97e+00 1a7tA d.157.1.1 63139 1r3eA 309 6.27e+00 b.122.1.1 -5118 unknown_sccs -10146 1gpl 432 7.09e+00 1gpl b.12.1.2 23645 c.69.1.19 34793 1ja1A 622 7.65e+00 1amoA b.43.4.1 62803 c.23.5.2 62804 c.25.1.4 62805 1pcfA 66 7.66e+00 1pcfA d.18.1.1 38142 1c24A 263 7.79e+00 1c24A d.127.1.1 41148 1obbA 480 7.88e+00 c.2.1.5 86760 d.162.1.2 86761 1m1nB 522 7.99e+00 c.92.2.3 78418 1e0wA 313 8.40e+00 1taxA c.1.8.3 59150 1ldg 316 9.17e+00 1ceqA c.2.1.5 30165 d.162.1.1 42132 1innA 166 9.76e+00 1j98A d.185.1.2 62608 1vjeA 166 9.83e+00 d.185.1.2 -10261 1s0uA 408 9.94e+00 b.43.3.1 -4053 b.44.1.1 -4061 c.37.1.8 -7096 1od8A 313 9.94e+00 c.1.8.3 86838 1tuhA 156 1.00e+01 1pv9A 348 1.04e+01 c.55.2.1 -7610 d.127.1.1 -11000 1g0oA 283 1.11e+01 1ybvA c.2.1.2 60181 1iy8A 267 1.13e+01 c.2.1.2 83774 2rmcA 182 1.14e+01 2cpl b.62.1.1 27491 1id0A 152 1.19e+01 d.122.1.3 66111 1kq3A 376 1.20e+01 e.22.1.2 68790 1c4kA 730 1.21e+01 1ordA c.23.1.4 31273 c.67.1.5 34502 d.125.1.1 41123 1lrwA 600 1.33e+01 b.70.1.1 -4629 1l8aA 886 1.37e+01 c.36.1.6 73678 c.36.1.10 73677 c.48.1.1 73679 1gs5A 258 1.37e+01 c.73.1.2 70395 1msk 331 1.38e+01 1msk d.173.1.1 42495 1iwmA 186 1.42e+01 b.125.1.2 83758 1d4fA 431 1.51e+01 1b3rA c.2.1.4 30110 c.23.12.3 31370 1io1A 398 1.55e+01 1io1A e.32.1.1 62611 1lssA 140 1.60e+01 c.2.1.9 74246 1qniA 581 1.61e+01 1qniA b.6.1.4 23042 b.69.3.1 27642 1kk1A 410 1.61e+01 b.43.3.1 72634 b.44.1.1 72635 c.37.1.8 72636 1cvrA 435 1.63e+01 1cvrA b.1.18.12 21949 c.17.1.2 31006 1ev7A 317 1.72e+01 1ev7B c.52.1.9 33315 1nnwA 252 1.78e+01 d.159.1.5 80674 1j7nA 776 1.82e+01 d.92.1.14 66409 d.92.1.14 66410 d.166.1.1 66411 2napA 723 1.85e+01 2napA b.52.2.2 26926 c.81.1.1 35334 1m15A 357 1.95e+01 a.83.1.1 78368 d.128.1.2 78369 1fohA 664 2.00e+01 1fohA c.3.1.2 30381 c.47.1.10 33078 d.16.1.2 37900 1qs1A 462 2.16e+01 1qs1A d.166.1.1 42260 d.166.1.1 42261 1ukfA 188 2.18e+01 unknown_sccs -8886 1qh8B 519 2.33e+01 1qguB c.92.2.3 35634 1dxrH 258 2.35e+01 6prcH b.41.1.1 25456 f.23.10.1 43433 1fcjA 322 2.43e+01 1oasA c.79.1.1 35289 1o6uA 403 2.43e+01 a.5.3.1 -366 unknown_sccs -3048 c.13.1.1 -6221 1lj5A 379 2.43e+01 e.1.1.1 73928 1jeoA 180 2.50e+01 c.80.1.3 66611 1s1dA 331 2.52e+01 unknown_sccs -4566 1inp 400 2.59e+01 1inp e.7.1.1 42972 1ivyA 452 2.63e+01 1ivyA c.69.1.5 34654 1dbxA 158 2.69e+01 1dbuA d.116.1.1 40928 1bg0 356 2.70e+01 1qh4A a.83.1.1 18476 d.128.1.2 41211 1oh0A 131 2.77e+01 d.17.4.3 87004 1m32A 366 2.81e+01 c.67.1.3 78508 2bpa1 426 2.87e+01 2bpa1 1havA 217 2.97e+01 1havA b.47.1.4 26423 1pn0A 665 3.04e+01 c.3.1.2 -5992 c.47.1.10 -7513 d.16.1.2 -9210 1ka9H 200 3.08e+01 c.23.16.1 77308 1kv8A 216 3.11e+01 c.1.2.3 73054 1q6oA 216 3.11e+01 c.1.2.3 -5162 1hlrA 907 3.12e+01 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 1alo 907 3.17e+01 1alo 1h09A 338 3.19e+01 b.109.1.1 83420 c.1.8.8 83421 1jmxA 494 3.19e+01 a.3.1.7 66901 a.3.1.7 66902 b.1.18.14 66903 b.1.18.14 66904 b.61.4.1 66905 1lk9A 448 3.40e+01 c.67.1.1 78057 1djxB 624 3.42e+01 1djxB a.39.1.7 17343 b.7.1.1 23160 c.1.18.1 29588 1mh1 186 3.44e+01 1eesA c.37.1.8 32002 1sdjA 310 3.48e+01 d.21.1.2 -9420 d.21.1.2 -9421 1iq4A 179 3.54e+01 1iq4A d.77.1.1 62641 1srqA 341 3.54e+01 1eljA 381 3.65e+01 4mbp c.94.1.1 35791 1s72H 171 3.66e+01 1f20A 435 3.72e+01 b.43.4.1 64932 c.25.1.4 64933 1ltlA 279 3.75e+01 b.40.4.11 84701 1qhqA 140 3.86e+01 1qhqA b.6.1.1 63326 1m3sA 186 3.88e+01 c.80.1.3 78573 1htwA 158 3.92e+01 c.37.1.18 71083 1cz4A 185 3.93e+01 1cz4A b.52.2.3 26934 d.31.1.1 38468