# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1pj5A 830 3.28e-35 unknown_sccs -4066 c.3.1.2 -6031 d.16.1.5 -9251 unknown_sccs -10171 1nrkA 328 6.09e-30 unknown_sccs -4071 unknown_sccs -10176 1chmA 401 1.19e+00 1chmA c.55.2.1 33545 d.127.1.1 41142 2gsaA 432 1.61e+00 2gsaA c.67.1.4 34446 1qmgA 524 2.22e+00 1qmgA a.100.1.2 18785 c.2.1.6 30182 1lx7A 253 2.33e+00 c.56.2.1 74329 1n5dA 288 2.53e+00 c.2.1.2 80030 1hu4A 288 2.57e+00 1hu4A 1i6wA 181 2.78e+00 1i6wA c.69.1.18 61859 1rxyA 253 3.19e+00 c.56.2.1 -7834 1ispA 181 3.47e+00 c.69.1.18 76778 1bjwA 382 4.15e+00 1bjwA c.67.1.1 34349 1b5pA 385 4.26e+00 c.67.1.1 -8133 1hyhA 309 4.90e+00 1hyhA c.2.1.5 30150 d.162.1.1 42117 1fnoA 417 5.07e+00 c.56.5.4 75841 d.58.19.1 70145 1erjA 393 5.35e+00 1erjA b.69.4.1 27660 1itwA 741 6.31e+00 c.77.1.2 76793 1e5kA 201 8.10e+00 1fr9A c.68.1.8 34578 1jdw 423 1.09e+01 1jdw d.126.1.2 41129 1bdmA 327 1.21e+01 1bmdA c.2.1.5 30137 d.162.1.1 42104 1g7sA 594 1.37e+01 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 1pmd 675 1.56e+01 1pmd d.11.1.1 37491 d.11.1.1 37492 d.175.1.1 42562 e.3.1.1 42771 1pbtA 244 1.63e+01 unknown_sccs -6866 2fcr 173 1.64e+01 1rcf c.23.5.1 31151 1im8A 244 1.80e+01 c.66.1.14 66212 1q0uA 219 1.81e+01 c.37.1.19 -7205 1zfjA 491 1.82e+01 1ak5 c.1.5.1 28638 d.37.1.1 38540 d.37.1.1 38541 1n9eA 787 1.97e+01 b.30.2.1 -3529 d.17.2.1 -9278 d.17.2.1 -9279 1k68A 140 2.22e+01 c.23.1.1 -6403 1k66A 149 2.36e+01 c.23.1.1 -6406 1uxoA 192 2.41e+01 1iq4A 179 2.45e+01 1iq4A d.77.1.1 62641 1rj9A 304 2.45e+01 a.24.13.1 -631 c.37.1.10 -7129 1edt 271 2.49e+01 2ebn c.1.8.5 28993 1ixh 321 2.59e+01 1ixh c.94.1.1 35761 2ng1 293 2.71e+01 1ng1 a.24.13.1 16962 c.37.1.10 32273 1n40A 396 2.80e+01 a.104.1.1 79977 1cc1L 498 2.88e+01 1h2rL e.18.1.1 43301 1lnsA 763 2.97e+01 a.40.2.1 78101 b.18.1.13 78102 c.69.1.21 78103 1dpgA 485 3.03e+01 1dpgA c.2.1.3 30074 d.81.1.5 39989 1m98A 317 3.04e+01 a.175.1.1 78866 d.17.4.6 78867 1jnrA 643 3.13e+01 a.7.3.1 66966 c.3.1.4 66967 d.168.1.1 66968 1b0pA 1231 3.29e+01 c.36.1.8 31831 c.36.1.12 31832 c.48.1.3 33104 c.64.1.1 34157 d.58.1.5 39003 1sxrA 183 3.39e+01 1ls1A 295 3.42e+01 a.24.13.1 78170 c.37.1.10 78171 1vjzA 341 3.73e+01 c.1.8.3 -5318 1jpmA 366 3.81e+01 c.1.11.2 67031 d.54.1.1 67032 1l2lA 457 3.98e+01 c.72.1.3 77656