# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1ig0A	319	3.45e+00	1ig0A	b.82.6.1	62354
				c.100.1.1	62355
1mat	264	6.17e+00	1c24A	d.127.1.1	41152
1hssA	124	6.25e+00	1bea	a.52.1.2	17819
1cl1A	395	1.02e+01	1cl2A	c.67.1.3	34395
1cl2A	395	1.13e+01	1cl2A	c.67.1.3	34397
1fo1A	271	1.19e+01	1fo1A	c.10.2.3	30869
				d.58.7.2	39213
1jgsA	138	1.28e+01		a.4.5.28	66683
1h1dA	221	1.34e+01		c.66.1.1	83452
1vk5A	157	1.41e+01			
1kaeA	434	1.89e+01		c.82.1.2	72247
1gpmA	525	1.95e+01	1gpmA	c.23.16.1	31405
				c.26.2.1	31608
				d.52.2.1	38826
1k75A	434	1.95e+01		c.82.1.2	68253
1di0A	158	2.11e+01	1di0A	c.16.1.1	30957
1c24A	263	2.17e+01	1c24A	d.127.1.1	41148
2matA	264	2.18e+01	1c24A	d.127.1.1	41146
4matA	278	2.19e+01	1c24A	d.127.1.1	41150
1olgA	42	2.29e+01	1olgA	a.53.1.1	17835
1vjuA	309	2.55e+01		unknown_sccs	-9594
1akeA	214	2.67e+01	1zin	c.37.1.1	31905
				g.41.2.1	45185
1h67A	108	2.80e+01		a.40.1.1	65643
1cdwA	179	2.81e+01	1ytbA	d.129.1.1	41212
				d.129.1.1	41213
1j0wA	103	2.83e+01		b.55.1.2	-4364
1oheA	348	3.07e+01		c.45.1.1	87013
				c.45.1.1	87014
1jf8A	131	3.17e+01		c.44.1.1	66621
1a7aA	432	3.34e+01	1b3rA	c.2.1.4	30104
				c.23.12.3	31364
1ml4A	308	3.47e+01		c.78.1.1	79255
				c.78.1.1	79256
1pwaA	162	3.48e+01		b.42.1.1	-4009
1qmpA	130	3.59e+01	1dz3A	c.23.1.1	31106
1a04A	215	3.63e+01	1a04A	a.4.6.2	16234
				c.23.1.1	31089
1aky	221	3.72e+01	1zin	c.37.1.1	31896
				g.41.2.1	45197
1oivA	191	3.72e+01		c.37.1.8	-7074
1kqfB	294	3.79e+01		d.58.1.5	75900
				f.23.22.1	75901
1li4A	432	3.79e+01		c.2.1.4	84616
				c.23.12.3	84617
1who	96	3.95e+01	1who	b.7.3.1	23215