# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ig0A 319 1.87e+00 1ig0A b.82.6.1 62354 c.100.1.1 62355 1cl2A 395 3.46e+00 1cl2A c.67.1.3 34397 1cl1A 395 3.82e+00 1cl2A c.67.1.3 34395 4matA 278 4.89e+00 1c24A d.127.1.1 41150 1mat 264 4.94e+00 1c24A d.127.1.1 41152 1c24A 263 5.50e+00 1c24A d.127.1.1 41148 2matA 264 5.51e+00 1c24A d.127.1.1 41146 1hssA 124 6.93e+00 1bea a.52.1.2 17819 1jgsA 138 8.29e+00 a.4.5.28 66683 1aky 221 1.03e+01 1zin c.37.1.1 31896 g.41.2.1 45197 1cdwA 179 1.37e+01 1ytbA d.129.1.1 41212 d.129.1.1 41213 1oheA 348 1.49e+01 c.45.1.1 87013 c.45.1.1 87014 1k75A 434 1.61e+01 c.82.1.2 68253 1pwaA 162 1.64e+01 b.42.1.1 -4009 1vk5A 157 1.66e+01 1kaeA 434 1.72e+01 c.82.1.2 72247 1kqfB 294 1.92e+01 d.58.1.5 75900 f.23.22.1 75901 1vjuA 309 1.92e+01 unknown_sccs -9594 1b3rA 431 2.17e+01 1b3rA c.2.1.4 30106 c.23.12.3 31366 1di0A 158 2.18e+01 1di0A c.16.1.1 30957 1j0wA 103 2.21e+01 b.55.1.2 -4364 1oivA 191 2.44e+01 c.37.1.8 -7074 1d4fA 431 2.45e+01 1b3rA c.2.1.4 30110 c.23.12.3 31370 1n6zA 105 2.59e+01 unknown_sccs 85369 1li4A 432 2.62e+01 c.2.1.4 84616 c.23.12.3 84617 1h1dA 221 2.68e+01 c.66.1.1 83452 1a7aA 432 2.72e+01 1b3rA c.2.1.4 30104 c.23.12.3 31364 1ooyA 481 2.81e+01 unknown_sccs -6867 unknown_sccs -6873 1o9lA 481 2.85e+01 unknown_sccs 81242 unknown_sccs 81241 1fo1A 271 2.85e+01 1fo1A c.10.2.3 30869 d.58.7.2 39213 1js8A 394 3.09e+01 a.86.1.1 67219 b.112.1.1 67220 1l0qA 391 3.22e+01 b.1.3.1 77644 b.69.2.3 77645 1f47B 144 3.24e+01 1f46A d.129.4.1 59645 1mz4A 137 3.36e+01 a.3.1.1 -150 1olgA 42 3.36e+01 1olgA a.53.1.1 17835 1j26A 112 3.44e+01 1ct9A 553 3.50e+01 1ct9A c.26.2.1 31616 d.153.1.1 41834 1a04A 215 3.56e+01 1a04A a.4.6.2 16234 c.23.1.1 31089 1jfvA 131 3.57e+01 c.44.1.1 66654 1f7wA 144 3.61e+01 1f46A d.129.4.1 59679 1iy8A 267 3.62e+01 c.2.1.2 83774 1jf8A 131 3.64e+01 c.44.1.1 66621 1h67A 108 3.71e+01 a.40.1.1 65643 1tyfA 193 3.71e+01 1tyfA c.14.1.1 30885 1ytbB 180 3.71e+01 1ytbA d.129.1.1 41278 d.129.1.1 41279 1kb9B 352 3.72e+01 d.185.1.1 77313 d.185.1.1 77314 3kvt 115 3.72e+01 1t1dA d.42.1.2 38642 1iugA 352 3.73e+01 c.67.1.3 -8176 1ml4A 308 3.92e+01 c.78.1.1 79255 c.78.1.1 79256 1bt4A 362 3.96e+01 1bjnA c.67.1.4 34468 1a4pA 96 3.98e+01 1b4cA a.39.1.2 17176 1gpmA 525 3.98e+01 1gpmA c.23.16.1 31405 c.26.2.1 31608 d.52.2.1 38826