# List of top-scoring protein chains for t2k-100-30-bys hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jf8A 131 5.49e+00 c.44.1.1 66621 1o6zA 303 6.73e+00 c.2.1.5 81107 d.162.1.1 81108 1d7kA 421 6.97e+00 7odcA b.49.2.3 26486 c.1.6.1 28648 1jfvA 131 7.69e+00 c.44.1.1 66654 1jgsA 138 9.74e+00 a.4.5.28 66683 1aba 87 1.03e+01 1aba c.47.1.1 32760 1im4A 221 1.14e+01 unknown_sccs 62581 4matA 278 1.27e+01 1c24A d.127.1.1 41150 2matA 264 1.28e+01 1c24A d.127.1.1 41146 1c24A 263 1.28e+01 1c24A d.127.1.1 41148 1akeA 214 1.30e+01 1zin c.37.1.1 31905 g.41.2.1 45185 2hpaA 342 1.35e+01 1cviA c.60.1.2 33985 1b9yC 246 1.36e+01 1b9yC c.47.1.6 33052 1ovlA 271 1.41e+01 a.123.1.1 87455 1nd6A 354 1.41e+01 c.60.1.2 80407 1cl1A 395 1.43e+01 1cl2A c.67.1.3 34395 1dfmA 223 1.61e+01 1d2iA c.52.1.5 33295 1vk5A 157 1.63e+01 1a0rP 245 1.65e+01 1b9yC c.47.1.6 33054 1cl2A 395 1.69e+01 1cl2A c.67.1.3 34397 1n6zA 105 1.71e+01 unknown_sccs 85369 1gppA 237 1.71e+01 b.86.1.2 76262 1kqfB 294 1.79e+01 d.58.1.5 75900 f.23.22.1 75901 1cviA 342 1.85e+01 1cviA c.60.1.2 33989 1vduA 172 1.94e+01 unknown_sccs -1651 1mat 264 2.09e+01 1c24A d.127.1.1 41152 1s72X 92 2.15e+01 1jj2W 91 2.16e+01 1ffkU d.29.1.1 63108 1omiA 248 2.17e+01 a.4.5.4 87079 b.82.3.3 87080 1b7gO 340 2.27e+01 1b7gO c.2.1.3 29992 d.81.1.1 39907 1mz4A 137 2.27e+01 a.3.1.1 -150 1who 96 2.27e+01 1who b.7.3.1 23215 1jj2I 145 2.34e+01 1ffkG c.21.1.1 63094 1vsd 152 2.38e+01 1cxqA c.55.3.2 33625 1uhnA 189 2.42e+01 a.39.1.5 -853 1pwaA 162 2.42e+01 b.42.1.1 -4009 1r6xA 395 2.59e+01 b.122.1.3 -5125 c.26.1.5 -6620 1gx3A 284 2.62e+01 d.3.1.5 70678 1f7wA 144 2.67e+01 1f46A d.129.4.1 59679 1yagA 375 2.71e+01 1yagA c.55.1.1 33449 c.55.1.1 33450 1cxqA 162 2.71e+01 1cxqA c.55.3.2 33621 1cf2O 337 2.72e+01 1b7gO c.2.1.3 29994 d.81.1.1 39909 1itwA 741 3.15e+01 c.77.1.2 76793 1c02A 166 3.20e+01 1qspA a.24.10.2 16633 1qv9A 283 3.21e+01 unknown_sccs -6888 1ae1A 273 3.31e+01 1bdb c.2.1.2 29943 1hyhA 309 3.32e+01 1hyhA c.2.1.5 30150 d.162.1.1 42117 1l0qA 391 3.43e+01 b.1.3.1 77644 b.69.2.3 77645 1dmtA 696 3.56e+01 1dmtA d.92.1.4 40296 2btfA 375 3.59e+01 1yagA c.55.1.1 33429 c.55.1.1 33430 1e5xA 486 3.59e+01 c.79.1.1 59283 1qz5A 375 3.75e+01 c.55.1.1 -7590 c.55.1.1 -7591 1j0wA 103 3.77e+01 b.55.1.2 -4364 1h1dA 221 3.87e+01 c.66.1.1 83452 1k6zA 141 3.89e+01 d.198.1.1 68247 1i5hW 50 3.95e+01 1i5hW b.72.1.1 61785