# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1vk5A	157	8.20e+00			
1cl1A	395	9.54e+00	1cl2A	c.67.1.3	34395
1n6zA	105	1.05e+01		unknown_sccs	85369
1h1dA	221	2.22e+01		c.66.1.1	83452
1oivA	191	2.34e+01		c.37.1.8	-7074
1jj2I	145	2.55e+01	1ffkG	c.21.1.1	63094
1c24A	263	2.86e+01	1c24A	d.127.1.1	41148
1f46A	140	2.88e+01	1f46A	d.129.4.1	59643
1bx4A	345	3.01e+01	1bx4A	c.72.1.1	34935
1kkhA	317	3.55e+01		d.14.1.5	72645
				d.58.26.3	72646
1lnwA	147	3.68e+01		a.4.5.28	78104
1pwaA	162	3.82e+01		b.42.1.1	-4009
1djxB	624	3.94e+01	1djxB	a.39.1.7	17343
				b.7.1.1	23160
				c.1.18.1	29588