# List of top-scoring protein chains for t04-100-30-bys hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1jf8A	131	6.50e+00		c.44.1.1	66621
1o6zA	303	7.94e+00		c.2.1.5	81107
				d.162.1.1	81108
1aba	87	1.21e+01	1aba	c.47.1.1	32760
1c24A	263	1.49e+01	1c24A	d.127.1.1	41148
2hpaA	342	1.57e+01	1cviA	c.60.1.2	33985
1ovlA	271	1.64e+01		a.123.1.1	87455
1nd6A	354	1.64e+01		c.60.1.2	80407
1cl1A	395	1.67e+01	1cl2A	c.67.1.3	34395
1dfmA	223	1.87e+01	1d2iA	c.52.1.5	33295
1vk5A	157	1.89e+01			
1a0rP	245	1.91e+01	1b9yC	c.47.1.6	33054
1n6zA	105	1.98e+01		unknown_sccs	85369
1gppA	237	1.98e+01		b.86.1.2	76262
1kqfB	294	2.08e+01		d.58.1.5	75900
				f.23.22.1	75901
1vduA	172	2.24e+01		unknown_sccs	-1651
1s72X	92	2.48e+01			
1jj2W	91	2.49e+01	1ffkU	d.29.1.1	63108
1omiA	248	2.51e+01		a.4.5.4	87079
				b.82.3.3	87080
1b7gO	340	2.62e+01	1b7gO	c.2.1.3	29992
				d.81.1.1	39907
1mz4A	137	2.62e+01		a.3.1.1	-150
1who	96	2.62e+01	1who	b.7.3.1	23215
1jj2I	145	2.70e+01	1ffkG	c.21.1.1	63094
1vsd	152	2.74e+01	1cxqA	c.55.3.2	33625
1uhnA	189	2.78e+01		a.39.1.5	-853
1pwaA	162	2.78e+01		b.42.1.1	-4009
1r6xA	395	2.98e+01		b.122.1.3	-5125
				c.26.1.5	-6620
1gx3A	284	3.01e+01		d.3.1.5	70678
1cxqA	162	3.11e+01	1cxqA	c.55.3.2	33621
1cf2O	337	3.12e+01	1b7gO	c.2.1.3	29994
				d.81.1.1	39909
1itwA	741	3.61e+01		c.77.1.2	76793
1c02A	166	3.66e+01	1qspA	a.24.10.2	16633
1qv9A	283	3.67e+01		unknown_sccs	-6888
1hyhA	309	3.80e+01	1hyhA	c.2.1.5	30150
				d.162.1.1	42117
1l0qA	391	3.92e+01		b.1.3.1	77644
				b.69.2.3	77645