# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1hssA	124	6.50e-01	1bea	a.52.1.2	17819
1opbA	135	1.13e+00	1hmt	b.60.1.2	27216
1p9yA	121	1.88e+00		unknown_sccs	-8996
2occI	73	2.05e+00	2occI	f.23.3.1	43523
1oksA	56	2.09e+00		unknown_sccs	-426
1v54I	73	2.17e+00		f.23.3.1	-12108
3kvt	115	2.19e+00	1t1dA	d.42.1.2	38642
1di0A	158	3.13e+00	1di0A	c.16.1.1	30957
1jkgA	140	4.09e+00		d.17.4.2	66795
1kqwA	134	4.96e+00		b.60.1.2	72887
1th8A	145	6.27e+00			
1jb0E	75	6.79e+00	1pse	b.34.4.2	62824
1cm9A	74	7.92e+00	1b3aA	d.9.1.1	37405
1ub9A	100	8.12e+00		a.4.5.28	-231
1mg4A	113	8.85e+00		d.15.11.1	84953
1qo0D	196	8.87e+00	1qo0D	c.23.1.3	31125
1vi0A	206	9.29e+00		a.4.1.9	-206
				a.121.1.1	-1659
1jf8A	131	1.01e+01		c.44.1.1	66621
1qnnA	191	1.03e+01	1avmA	a.2.11.1	15792
				d.44.1.1	38755
1jxcA	68	1.03e+01		g.3.7.5	77201
1who	96	1.06e+01	1who	b.7.3.1	23215
1iro	54	1.07e+01	1rb9	g.41.5.1	45223
1pzwA	80	1.11e+01		unknown_sccs	-12740
1cxzB	86	1.15e+01	1cxzB	a.2.6.1	15705
1qv9A	283	1.19e+01		unknown_sccs	-6888
1vk5A	157	1.33e+01			
1aonO	97	1.34e+01		b.35.1.1	24642
1djxB	624	1.88e+01	1djxB	a.39.1.7	17343
				b.7.1.1	23160
				c.1.18.1	29588
1sedA	117	1.91e+01			
1uesA	191	2.33e+01			
1lfdA	87	2.38e+01	1lfdA	d.15.1.5	37622
1b3aA	67	2.59e+01	1b3aA	d.9.1.1	37410
1pwaA	162	2.67e+01		b.42.1.1	-4009
1h03P	125	2.69e+01		g.18.1.1	83411
				g.18.1.1	83412
1j30A	144	2.81e+01		a.25.1.1	-650
1gnwA	211	2.83e+01	1gnwA	a.45.1.1	17727
				c.47.1.5	33021
1nal1	297	2.94e+01	1nal3		
1a4pA	96	3.15e+01	1b4cA	a.39.1.2	17176
1vduA	172	3.24e+01		unknown_sccs	-1651
1h7zA	194	3.26e+01	1qhvA	b.21.1.1	60733
1cxqA	162	3.30e+01	1cxqA	c.55.3.2	33621
2lhb	149	3.37e+01	2fal	a.1.1.2	15597
1lmiA	131	3.39e+01		b.1.19.1	78098
1s5lA	344	3.45e+01			
1hq3D	103	3.66e+01	1aoiB	a.22.1.1	16464
1bm9A	122	3.77e+01	1bm9A	a.4.5.7	16116