CreatePredAlphaCost pred_alpha2k alpha11 T0240.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0240.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 3 near_backbone 3 way_back 3 dry5 5 dry6.5 6 dry8 5 dry12 2 \
	phobic_fit 2 \
	sidechain 1 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 20  \
	pred_alpha2k 2 \
	pred_alpha04 4 \
	constraints 10 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 7 \
	hbond_geom_beta_pair 15

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.

# include T0240.t2k.dssp-ehl2.constraints
# include T0240.t2k.dssp-ebghstl.constraints
# include T0240.t2k.stride-ebghtl.constraints
# include T0240.t2k.str2.constraints
# include T0240.t2k.alpha.constraints
# include T0240.t2k.bys.constraints

include T0240.t04.dssp-ehl2.constraints
include T0240.t04.dssp-ebghstl.constraints
include T0240.t04.stride-ebghtl.constraints
include T0240.t04.str2.constraints
include T0240.t04.alpha.constraints
include T0240.t04.bys.constraints

# now for the sheets as derived from 1ihr
#  +90 for other dimer

# different dimers
SheetConstraint	V33 D32 	G162 S163 	hbond D32 	15.0
#    (bulge)
SheetConstraint	K28 A20  	N168  T176 	hbond V27 	15.0

SheetConstraint	V123 D122 	G72 S73 	hbond D122	15.0
#    (bulge)
SheetConstraint	K118 A110  	N78  T86 	hbond V117	15.0

# same dimer
SheetConstraint	V33 D32 	V39 D40 	hbond V33 	15.0
#    (bulge)
SheetConstraint	K30 K28 	Q43 L45 	hbond V29	15.0

SheetConstraint	V123 D122	V129 D130 	hbond V123	15.0
#    (bulge)
SheetConstraint	K120 K118	Q133 L135 	hbond V119	15.0

# symmetry!
SheetConstraint	L80 T86 	T176 L170 	hbond L80 	15.0