# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1ihrA	76	4.98e-14	1ihrA	d.212.1.2	62392
1lr0A	129	4.01e-05		d.212.1.1	74213
1obpA	159	4.48e-02	1obpA	b.60.1.1	27092
1hn2A	159	4.95e-02		b.60.1.1	65890
1gt1A	159	4.96e-02		b.60.1.1	-4436
1ffkI	194	1.76e-01	1ffkI	d.12.1.2	37494
1aisA	182	3.59e-01	1ytbA	d.129.1.1	41288
				d.129.1.1	41289
1mp9A	198	2.06e+00		a.74.1.2	-1127
				a.74.1.2	-1128
1b6sA	355	3.17e+00	1b6rA	b.84.2.1	28242
				c.30.1.1	31649
				d.142.1.2	41494
1f5mB	180	3.80e+00	1f5mB	d.110.2.1	40896
1f5mA	180	3.80e+00	1f5mB	d.110.2.1	40895
1lci	550	4.73e+00	1lci	e.23.1.1	43349
1udsA	255	5.12e+00		d.14.1.4	-9055
				d.101.1.1	-10745
1vk8A	106	6.53e+00			
1n8jA	186	6.74e+00		c.47.1.10	85401
1jj2L	194	7.41e+00	1ffkI	d.12.1.2	63097
1pmmA	466	8.66e+00		c.67.1.6	-8159
1b6rA	355	8.79e+00	1b6rA	b.84.2.1	28241
				c.30.1.1	31648
				d.142.1.2	41493
1vkdA	338	1.07e+01			
1a99A	344	1.20e+01	1pot	c.94.1.1	35812
1fnmA	691	1.21e+01	1dar	b.43.3.1	25709
				c.37.1.8	32144
				d.14.1.1	37546
				d.58.11.1	39302
				d.58.11.1	39303
1h8uA	117	1.24e+01	1h8uA	d.169.1.1	60793
1mogA	67	1.34e+01		d.230.2.1	85034
1ghhA	81	1.41e+01	1ghhA	d.57.1.1	38940
1esgA	213	1.43e+01	1bam	c.52.1.3	33286
1gu7A	364	1.56e+01		b.35.1.2	83321
				c.2.1.1	83322
1js3A	486	1.57e+01		c.67.1.6	67215
1iwgA	1053	1.68e+01		d.58.44.1	76874
				d.58.44.1	76875
				d.58.44.1	76876
				d.58.44.1	76877
				d.225.1.1	76878
				d.225.1.1	76879
				f.35.1.1	76880
				f.35.1.1	76881
1f0kA	364	1.74e+01	1f0kA	c.87.1.2	35465
1bam	213	1.78e+01	1bam	c.52.1.3	33285
1a78A	134	1.99e+01	1c1lA	b.29.1.3	24212
2bc2B	227	2.21e+01	1a7tA	d.157.1.1	42032
1rtqA	299	2.31e+01		c.56.5.4	-7864
1h77A	605	2.50e+01			
1e2wA	251	2.62e+01	1hcz	b.2.6.1	22466
				b.84.2.2	28252
2bc2A	227	2.63e+01	1a7tA	d.157.1.1	42031
1amp	291	2.70e+01	1amp	c.56.5.4	33837
1lokA	291	2.70e+01		c.56.5.4	78122
1m1hA	248	2.96e+01		b.114.1.1	78415
				d.58.42.1	78416
1lrzA	426	3.10e+01		a.2.7.4	78167
				d.108.1.4	78168
				d.108.1.4	78169
1h7zA	194	3.21e+01	1qhvA	b.21.1.1	60733
1cy9A	264	3.22e+01	1ecl	e.10.1.1	43236
1fchA	368	3.25e+01	1fchA	a.118.8.1	19212
1pjbA	361	3.37e+01	1sayA	c.2.1.4	30103
				c.23.12.2	31363
5croA	66	3.41e+01	1orc	a.35.1.2	17044
1mqoA	227	3.45e+01			
1kk1A	410	3.66e+01		b.43.3.1	72634
				b.44.1.1	72635
				c.37.1.8	72636
1pjcA	361	3.70e+01	1sayA	c.2.1.4	30101
				c.23.12.2	31361
1sayA	361	3.72e+01	1sayA	c.2.1.4	30102
				c.23.12.2	31362
1n91A	108	3.75e+01		d.206.1.1	80326
1lw6E	281	3.78e+01		c.41.1.1	74293
1h91A	180	3.81e+01		b.60.1.1	60805
1ospO	257	3.82e+01	1ospO	b.76.1.1	27971
1qmvA	197	3.98e+01	1qq2A	c.47.1.10	33066