# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ihrA 76 1.44e-09 1ihrA d.212.1.2 62392 1lr0A 129 5.70e-05 d.212.1.1 74213 1jv2B 692 1.71e+00 b.1.15.1 67338 c.62.1.1 67339 d.200.1.1 67340 g.3.11.6 67341 g.3.11.6 67342 1ffkF 157 2.10e+00 1ffkF d.41.4.1 38628 1obpA 159 2.68e+00 1obpA b.60.1.1 27092 1jj2H 167 2.94e+00 1ffkF d.41.4.1 63093 1n8jA 186 3.00e+00 c.47.1.10 85401 1cy9A 264 3.25e+00 1ecl e.10.1.1 43236 1jlvA 209 3.71e+00 a.45.1.1 71729 c.47.1.5 71730 1hn2A 159 3.89e+00 b.60.1.1 65890 1gt1A 159 3.95e+00 b.60.1.1 -4436 1bc5A 269 4.20e+00 1af7 a.58.1.1 17929 c.66.1.8 34204 1hxrA 115 4.50e+00 1fwqA b.88.1.1 28392 1fwqA 123 5.25e+00 1fwqA b.88.1.1 28394 1gzsB 165 5.25e+00 a.168.1.1 76425 1af7 274 5.29e+00 1af7 a.58.1.1 17928 c.66.1.8 34203 1dvpA 220 5.53e+00 1dvpA a.118.9.2 19216 g.50.1.1 45358 1icxA 155 7.09e+00 d.129.3.1 71191 1fjgJ 105 7.76e+00 1fjfJ d.58.15.1 39330 1or7A 194 1.03e+01 a.4.13.2 87332 a.177.1.1 87333 1fca 55 1.42e+01 2fdn d.58.1.1 38945 1reoA 486 2.10e+01 c.3.1.2 -5997 d.16.1.5 -9217 1bdo 80 2.14e+01 1bdo b.84.1.1 28214 2cpl 165 2.16e+01 2cpl b.62.1.1 27420 1c0pA 363 2.25e+01 1an9A c.4.1.2 30647 d.16.1.3 37934 1jqlB 140 2.26e+01 c.37.1.20 63234 1lnqA 336 2.29e+01 c.2.1.9 74049 f.14.1.1 74050 1qs0A 407 2.35e+01 1qs0A c.36.1.11 31829 1k7gA 479 2.41e+01 unknown_sccs 77279 d.92.1.6 77280 1raxA 115 2.42e+01 1lfdA d.15.1.5 37626 1qtsA 247 2.47e+01 1qtsA b.1.10.1 22313 d.105.1.1 40789 1o9wA 177 2.57e+01 b.2.3.5 86713 1j9iA 68 2.60e+01 a.6.1.5 71619 1go7P 462 2.76e+01 unknown_sccs 76245 d.92.1.6 76246 1dqiA 124 2.78e+01 1do6A b.1.13.1 22357 1gwmA 153 2.80e+01 b.18.1.19 83348 1do6A 124 2.86e+01 1do6A b.1.13.1 22361 1cwoA 165 2.90e+01 2cpl b.62.1.1 27445 1mwwA 128 3.12e+01 unknown_sccs -10451 1b9kA 238 3.25e+01 1qtsA b.1.10.1 22315 d.105.1.1 40791 1k7qA 479 3.25e+01 unknown_sccs 77283 d.92.1.6 77284 1go8P 462 3.39e+01 unknown_sccs 76247 d.92.1.6 76248 1fchA 368 3.41e+01 1fchA a.118.8.1 19212 1vk8A 106 3.43e+01 1k7iA 479 3.44e+01 unknown_sccs 77281 d.92.1.6 77282 1iicA 422 3.54e+01 1nmtA d.108.1.2 62422 d.108.1.2 62423 1floA 422 3.56e+01 1floA a.60.9.1 18106 d.163.1.1 42166 1blu 82 3.62e+01 2fdn d.58.1.1 38948 1ospO 257 3.75e+01 1ospO b.76.1.1 27971 1usmA 80 3.82e+01 d.74.1.1 -10334 3tdt 274 3.82e+01 3tdt b.81.1.2 28053 1mk0A 97 3.89e+01 d.226.1.1 79216