# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ihrA 76 6.76e-11 1ihrA d.212.1.2 62392 1lr0A 129 4.56e-06 d.212.1.1 74213 1gt1A 159 3.35e+00 b.60.1.1 -4436 1obpA 159 3.44e+00 1obpA b.60.1.1 27092 1hn2A 159 3.72e+00 b.60.1.1 65890 1ospO 257 5.24e+00 1ospO b.76.1.1 27971 1kb9H 93 5.36e+00 f.23.13.1 77323 1f39A 101 5.92e+00 1umuA b.87.1.1 28386 1ezvG 93 6.24e+00 1ezvG f.23.13.1 59551 1sdjA 310 6.43e+00 d.21.1.2 -9420 d.21.1.2 -9421 1g72B 69 6.57e+00 4aahB a.137.2.1 19627 1gakA 141 7.61e+00 1gakA a.19.1.1 16415 1dkzA 219 7.98e+00 1dkzA unknown_sccs -445 unknown_sccs -3060 1j30A 144 8.05e+00 a.25.1.1 -650 1rh6A 55 9.29e+00 1aisA 182 9.73e+00 1ytbA d.129.1.1 41288 d.129.1.1 41289 1gen 218 1.11e+01 1gen b.66.1.1 27536 1fjgJ 105 1.11e+01 1fjfJ d.58.15.1 39330 1iwmA 186 1.29e+01 b.125.1.2 83758 1jp4A 308 1.36e+01 1jp4A e.7.1.1 63223 1qyaA 307 1.40e+01 1h16A 759 1.42e+01 c.7.1.1 76462 1ddmA 135 1.47e+01 2nmbA b.55.1.2 26993 1iwlA 182 1.49e+01 b.125.1.1 83757 1ksoA 101 1.57e+01 a.39.1.2 72926 1mtzA 293 1.64e+01 c.69.1.7 79467 1cei 94 1.76e+01 1cei a.28.2.1 16939 1b71A 191 1.82e+01 1ryt a.25.1.1 16647 g.41.5.1 45246 1gmiA 136 1.85e+01 b.7.1.1 65309 1lkoA 191 1.86e+01 a.25.1.1 78063 g.41.5.1 78064 1qgdA 662 1.86e+01 c.36.1.6 88367 c.36.1.10 88368 c.48.1.1 88369 1nzyA 269 1.95e+01 1nzyA c.14.1.3 30903 1h2bA 359 2.03e+01 b.35.1.2 -3679 c.2.1.1 -5703 1t95A 240 2.10e+01 1ryt 190 2.12e+01 1ryt a.25.1.1 16646 g.41.5.1 45245 1j2rA 199 2.15e+01 unknown_sccs -6799 1go3E 187 2.34e+01 b.40.4.5 83054 d.230.1.1 83055 1k99A 99 2.43e+01 a.21.1.1 68341 1i2kA 269 2.45e+01 e.17.1.1 -11995 1jigA 146 2.53e+01 a.25.1.1 71685 1p9qC 256 2.57e+01 1cc1L 498 2.62e+01 1h2rL e.18.1.1 43301 1gxuA 91 2.65e+01 d.58.10.1 76378 1uw4B 248 2.69e+01 unknown_sccs -1560 1jbbA 153 2.71e+01 1u9aA d.20.1.1 62842 1cmbA 104 2.94e+01 1cmbA unknown_sccs 17460 1cmcA 104 2.98e+01 1cmbA unknown_sccs 17462 1pm6A 72 3.04e+01 a.6.1.7 -386 1unkA 87 3.06e+01 1cei a.28.2.1 16935 1mjhA 162 3.14e+01 1mjhA c.26.2.4 31639 1o0uA 429 3.19e+01 c.118.1.1 80743 1ko6A 187 3.26e+01 b.119.1.1 77471 1jatA 155 3.28e+01 1u9aA d.20.1.1 62818 1uisA 231 3.30e+01 d.22.1.1 -9450 1nt0A 286 3.35e+01 b.23.1.1 86143 b.23.1.1 86144 g.3.11.1 86145 1kx5D 125 3.44e+01 a.22.1.1 77596 1c0pA 363 3.49e+01 1an9A c.4.1.2 30647 d.16.1.3 37934 1fjlA 81 3.70e+01 2hddA a.4.1.1 16017 1o0xA 262 3.70e+01 d.127.1.1 80755 1esiA 262 3.73e+01 1skf e.3.1.1 42682 1lj2A 110 3.84e+01 h.1.13.2 73926 1orc 71 3.93e+01 1orc a.35.1.2 17054 1a2vA 655 3.94e+01 1a2vA b.30.2.1 24416 d.17.2.1 38059 d.17.2.1 38060