# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1ihrA	76	1.33e-10	1ihrA	d.212.1.2	62392
1lr0A	129	5.11e-04		d.212.1.1	74213
1a2vA	655	2.05e+00	1a2vA	b.30.2.1	24416
				d.17.2.1	38059
				d.17.2.1	38060
1f5mA	180	2.41e+00	1f5mB	d.110.2.1	40895
1dkzA	219	3.79e+00	1dkzA	unknown_sccs	-445
				unknown_sccs	-3060
1q0rA	298	4.97e+00		unknown_sccs	-8330
1v3eA	431	5.36e+00		b.68.1.1	-4584
1esiA	262	5.55e+00	1skf	e.3.1.1	42682
1vkdA	338	5.99e+00			
1tuhA	156	8.64e+00			
1h8uA	117	9.60e+00	1h8uA	d.169.1.1	60793
1iow	306	1.04e+01	1iow	c.30.1.2	31713
				d.142.1.1	41481
1fjgJ	105	1.19e+01	1fjfJ	d.58.15.1	39330
1gt1A	159	1.33e+01		b.60.1.1	-4436
1hn2A	159	1.33e+01		b.60.1.1	65890
1obpA	159	1.39e+01	1obpA	b.60.1.1	27092
1lw6E	281	1.40e+01		c.41.1.1	74293
1h16A	759	1.65e+01		c.7.1.1	76462
1orc	71	1.65e+01	1orc	a.35.1.2	17054
1gp1A	198	1.67e+01	1gp1A	c.47.1.10	33059
1cm5A	759	1.76e+01	1cm5A	c.7.1.1	30671
1f39A	101	1.79e+01	1umuA	b.87.1.1	28386
1avmA	201	1.85e+01	1avmA	a.2.11.1	15782
				d.44.1.1	38745
1bsmA	201	1.86e+01	1avmA	a.2.11.1	15780
				d.44.1.1	38743
1xgsA	295	1.90e+01	1bn5	a.4.5.25	16216
				d.127.1.1	41153
5croA	66	2.01e+01	1orc	a.35.1.2	17044
1gpl	432	2.29e+01	1gpl	b.12.1.2	23645
				c.69.1.19	34793
1nxiA	132	2.30e+01		d.58.47.1	86381
1pjcA	361	2.41e+01	1sayA	c.2.1.4	30101
				c.23.12.2	31361
1oyeA	1049	2.58e+01		d.58.44.1	87587
				d.58.44.1	87588
				d.58.44.1	87589
				d.58.44.1	87590
				d.225.1.1	87591
				d.225.1.1	87592
				f.35.1.1	87593
				f.35.1.1	87594
1dxrH	258	2.69e+01	6prcH	b.41.1.1	25456
				f.23.10.1	43433
1qmvA	197	2.73e+01	1qq2A	c.47.1.10	33066
1k8wA	327	2.80e+01		b.122.1.1	83094
				unknown_sccs	-10143
1n8jA	186	2.86e+01		c.47.1.10	85401
1gtdA	85	2.88e+01		d.58.45.1	76344
1q48A	134	2.92e+01		unknown_sccs	-9776
1j6qA	136	3.16e+01		b.40.9.1	77091
1h7eA	245	3.46e+01		c.68.1.13	60717
1avyA	74	3.51e+01	1avyB	h.1.17.1	45656
1b6rA	355	3.70e+01	1b6rA	b.84.2.1	28241
				c.30.1.1	31648
				d.142.1.2	41493
1mp9A	198	3.75e+01		a.74.1.2	-1127
				a.74.1.2	-1128
1szwA	379	3.85e+01		unknown_sccs	-10164
1b06A	210	3.89e+01	1avmA	a.2.11.1	15740
				d.44.1.1	38737
1js3A	486	3.98e+01		c.67.1.6	67215