# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ihrA 76 5.47e-11 1ihrA d.212.1.2 62392 1lr0A 129 2.36e-05 d.212.1.1 74213 1hn2A 159 8.16e-01 b.60.1.1 65890 1gt1A 159 8.20e-01 b.60.1.1 -4436 1obpA 159 8.24e-01 1obpA b.60.1.1 27092 1iow 306 8.90e-01 1iow c.30.1.2 31713 d.142.1.1 41481 1f5mA 180 9.68e-01 1f5mB d.110.2.1 40895 1dkzA 219 1.93e+00 1dkzA unknown_sccs -445 unknown_sccs -3060 1a2vA 655 2.18e+00 1a2vA b.30.2.1 24416 d.17.2.1 38059 d.17.2.1 38060 1orc 71 2.89e+00 1orc a.35.1.2 17054 1tuhA 156 3.04e+00 1esiA 262 3.13e+00 1skf e.3.1.1 42682 1n8jA 186 3.31e+00 c.47.1.10 85401 5croA 66 3.49e+00 1orc a.35.1.2 17044 1mp9A 198 3.64e+00 a.74.1.2 -1127 a.74.1.2 -1128 1h16A 759 4.42e+00 c.7.1.1 76462 1e25A 282 4.92e+00 1e25A e.3.1.1 42731 1q47A 495 5.31e+00 1fjgJ 105 5.53e+00 1fjfJ d.58.15.1 39330 1oyeA 1049 5.58e+00 d.58.44.1 87587 d.58.44.1 87588 d.58.44.1 87589 d.58.44.1 87590 d.225.1.1 87591 d.225.1.1 87592 f.35.1.1 87593 f.35.1.1 87594 1v3eA 431 6.11e+00 b.68.1.1 -4584 1q48A 134 6.69e+00 unknown_sccs -9776 1aisA 182 6.87e+00 1ytbA d.129.1.1 41288 d.129.1.1 41289 1qmvA 197 7.19e+00 1qq2A c.47.1.10 33066 1gp1A 198 7.28e+00 1gp1A c.47.1.10 33059 1cm5A 759 7.59e+00 1cm5A c.7.1.1 30671 1avyA 74 7.86e+00 1avyB h.1.17.1 45656 1b6rA 355 8.15e+00 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 1quqB 121 9.66e+00 1quqB b.40.4.3 25305 1o1zA 234 1.01e+01 c.1.18.3 86555 1lw6E 281 1.02e+01 c.41.1.1 74293 1mrg 263 1.27e+01 1mrj d.165.1.1 42183 1nxiA 132 1.42e+01 d.58.47.1 86381 1ei5A 520 1.45e+01 1ei5A b.61.3.1 27418 b.61.3.1 27419 e.3.1.1 42772 1iloA 77 1.49e+01 c.47.1.1 66205 1avmA 201 1.54e+01 1avmA a.2.11.1 15782 d.44.1.1 38745 1iba 101 1.61e+01 1iba d.95.1.1 40567 1v2yA 105 1.61e+01 d.15.1.1 -9148 1crzA 403 1.62e+01 1crzA b.68.4.1 27629 c.51.2.1 33211 1q18A 332 1.63e+01 1dymA 402 1.68e+01 1celA b.29.1.10 24304 1xgsA 295 1.69e+01 1bn5 a.4.5.25 16216 d.127.1.1 41153 1ojjA 402 1.73e+01 b.29.1.10 -3473 1vkdA 338 1.74e+01 1pj5A 830 1.83e+01 unknown_sccs -4066 c.3.1.2 -6031 d.16.1.5 -9251 unknown_sccs -10171 1k1xA 659 1.84e+01 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1qe3A 489 1.85e+01 2bce c.69.1.1 34630 1l1jA 239 1.95e+01 b.47.1.1 84516 1ghhA 81 2.00e+01 1ghhA d.57.1.1 38940 1q0rA 298 2.03e+01 unknown_sccs -8330 1f39A 101 2.06e+01 1umuA b.87.1.1 28386 1h09A 338 2.06e+01 b.109.1.1 83420 c.1.8.8 83421 1urrA 102 2.17e+01 1p4kA 295 2.24e+01 d.153.1.5 87772 1dnlA 199 2.26e+01 1ci0A b.45.1.1 25753 1bsmA 201 2.51e+01 1avmA a.2.11.1 15780 d.44.1.1 38743 1iazA 179 2.53e+01 1iazA b.97.1.1 62131 1n4kA 381 2.58e+01 unknown_sccs 79992 b.42.6.1 79993 1dceB 331 2.62e+01 1dceB a.102.4.3 18872 1j6qA 136 2.64e+01 b.40.9.1 77091 1cqyA 99 2.65e+01 1b9zA b.3.1.1 22527 1kngA 156 2.70e+01 c.47.1.10 72777 1lm8V 160 2.73e+01 b.3.3.1 74035 1st9A 143 2.74e+01 c.47.1.10 -7503 1qauA 112 2.75e+01 1qauA b.36.1.1 24779 1dxrH 258 2.83e+01 6prcH b.41.1.1 25456 f.23.10.1 43433 1ggxA 223 2.92e+01 1ggxA d.22.1.1 38367 1js3A 486 3.02e+01 c.67.1.6 67215 1dywA 173 3.06e+01 2cpl b.62.1.1 27505 1k8wA 327 3.07e+01 b.122.1.1 83094 unknown_sccs -10143 1iwlA 182 3.15e+01 b.125.1.1 83757 1ospO 257 3.26e+01 1ospO b.76.1.1 27971 1ad2 228 3.27e+01 1ad2 e.24.1.1 43353 1h8uA 117 3.31e+01 1h8uA d.169.1.1 60793 1vcbC 160 3.36e+01 1vcbC b.3.3.1 22535 1rh6A 55 3.81e+01 1r26A 125 3.84e+01 c.47.1.1 -7389 1h12A 405 3.98e+01 a.102.1.2 83447