# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1lr0A	129	7.19e-06		d.212.1.1	74213
1ihrA	76	3.64e-04	1ihrA	d.212.1.2	62392
1lj2A	110	2.41e+00		h.1.13.2	73926
1ezvG	93	2.63e+00	1ezvG	f.23.13.1	59551
1kb9H	93	2.63e+00		f.23.13.1	77323
1g5cA	170	4.06e+00	1g5cA	c.53.2.1	60264
1icxA	155	4.39e+00		d.129.3.1	71191
1kkeA	210	5.26e+00		b.21.1.2	68669
				b.83.1.2	68670
1cei	94	7.58e+00	1cei	a.28.2.1	16939
2trcP	217	9.96e+00	1b9yC	c.47.1.6	33051
1unkA	87	1.04e+01	1cei	a.28.2.1	16935
1eo9A	209	1.06e+01	3pchA	b.3.6.1	22731
1qu1A	155	1.56e+01	1qu1A	h.3.1.1	45670
1s4kA	120	1.61e+01			
1vkeA	133	1.75e+01			
1jj2H	167	1.78e+01	1ffkF	d.41.4.1	63093
1usmA	80	1.85e+01		d.74.1.1	-10334
1v5sA	126	1.87e+01			
1ksoA	101	2.34e+01		a.39.1.2	72926
1t6t1	118	2.44e+01			
1fvrA	327	2.46e+01		d.144.1.7	60047
1f39A	101	3.23e+01	1umuA	b.87.1.1	28386
1efnB	152	3.29e+01	1efnB	d.102.1.1	40699
2cthA	107	3.31e+01	3cyr	a.138.1.1	19652
1fx3A	169	3.42e+01	1fx3B	d.33.1.1	38524
1gotB	340	3.51e+01	1tbgA	b.69.4.1	27648
1bu8A	452	3.62e+01	1gpl	b.12.1.2	23647
				c.69.1.19	34795
3proC	166	3.72e+01	3proC	d.52.1.1	38812
				d.52.1.1	38813