# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1ihrA	76	3.28e-07	1ihrA	d.212.1.2	62392
1lr0A	129	8.27e-06		d.212.1.1	74213
1g5cA	170	7.84e-01	1g5cA	c.53.2.1	60264
1jj2H	167	1.07e+00	1ffkF	d.41.4.1	63093
1n8jA	186	1.41e+00		c.47.1.10	85401
1gt1A	159	2.34e+00		b.60.1.1	-4436
1hn2A	159	2.47e+00		b.60.1.1	65890
1obpA	159	3.23e+00	1obpA	b.60.1.1	27092
1nuyA	337	3.56e+00		e.7.1.1	86213
1frpA	335	4.30e+00	1frpA	e.7.1.1	42875
1h75A	81	5.36e+00	1h75A	c.47.1.1	60716
1q48A	134	6.18e+00		unknown_sccs	-9776
1oedC	260	6.90e+00		f.36.1.1	86913
1icxA	155	7.70e+00		d.129.3.1	71191
1hxrA	115	8.01e+00	1fwqA	b.88.1.1	28392
1urnA	97	9.50e+00	1urnA	d.58.7.1	39153
1c0pA	363	1.11e+01	1an9A	c.4.1.2	30647
				d.16.1.3	37934
1gzsB	165	1.18e+01		a.168.1.1	76425
1fm0E	150	1.19e+01	1fmaE	d.41.5.1	38629
1nt0A	286	1.31e+01		b.23.1.1	86143
				b.23.1.1	86144
				g.3.11.1	86145
1usmA	80	1.36e+01		d.74.1.1	-10334
1dkzA	219	1.51e+01	1dkzA	unknown_sccs	-445
				unknown_sccs	-3060
1oiaA	95	1.51e+01		d.58.7.1	87051
1bu8A	452	1.54e+01	1gpl	b.12.1.2	23647
				c.69.1.19	34795
1mk0A	97	1.55e+01		d.226.1.1	79216
1pytA	94	1.68e+01	1pytA	d.58.3.1	39064
1tiiD	99	1.69e+01	1tiiD	b.40.2.1	24965
1qb5D	99	1.78e+01		b.40.2.1	88357
1ospO	257	1.83e+01	1ospO	b.76.1.1	27971
1o0uA	429	1.93e+01		c.118.1.1	80743
1dzkA	157	2.06e+01	1obpA	b.60.1.1	27096
1rylA	167	2.45e+01			
1s9aA	257	2.52e+01			
1pbyA	489	2.60e+01		a.3.1.7	-178
				a.3.1.7	-179
				b.1.18.14	-2762
				b.1.18.14	-2763
				b.61.4.1	-4528
1lngA	87	2.60e+01		d.201.1.1	74045
1fjgJ	105	2.65e+01	1fjfJ	d.58.15.1	39330
1dxrC	336	2.86e+01	6prcC	a.138.1.2	19670
1nq7A	244	2.99e+01		a.123.1.1	-1682
1l3aA	228	3.05e+01		d.18.1.2	73531
1p36A	164	3.10e+01		d.2.1.3	-8840
1j30A	144	3.12e+01		a.25.1.1	-650
1fmb	104	3.30e+01	1fmb	b.50.1.1	26777
1nu4A	97	3.46e+01		d.58.7.1	80731
1iwmA	186	3.46e+01		b.125.1.2	83758
1jd5A	124	3.46e+01		g.52.1.1	66544
1sopA	26	3.48e+01		unknown_sccs	-12696
1ghj	79	3.49e+01	1ghj	b.84.1.1	28232
1k0mA	241	3.53e+01		a.45.1.1	67949
				c.47.1.5	67950
1fviA	297	3.68e+01	1fviA	b.40.4.6	25364
				d.142.2.1	41578
1cei	94	3.69e+01	1cei	a.28.2.1	16939