# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1j7xA	302	9.76e-01		c.14.1.2	66425
1awcA	110	1.13e+00	1awcA	a.4.5.21	16167
1g2rA	100	1.37e+00	1g2rA	d.192.1.1	60231
1mk0A	97	6.02e+00		d.226.1.1	79216
1byb	495	6.39e+00	1byb	c.1.8.1	28790
1q6cA	495	6.52e+00		c.1.8.1	-5300
1c2aA	120	7.23e+00	1c2aA	g.3.13.1	44349
				g.3.13.1	44350
1d8hA	311	9.64e+00	1d8iA	d.63.1.1	39544
1j90A	230	9.71e+00		c.37.1.1	66448
1eb0A	147	9.78e+00		b.107.1.1	64890
				d.58.38.1	64891
1d8iA	311	9.83e+00	1d8iA	d.63.1.1	39541
1etc	110	9.83e+00	1awcA	a.4.5.21	16162
1booA	323	9.99e+00	1booA	c.66.1.11	34248
4crxA	322	1.02e+01	4crxA	a.60.9.1	18095
				d.163.1.1	42155
1lfjA	119	1.02e+01			
1earA	147	1.05e+01		b.107.1.1	64875
				d.58.38.1	64876
1v3hA	495	1.13e+01			
1jbgA	109	1.16e+01		a.6.1.3	66480
1s7oA	113	1.27e+01			
1oe0A	230	1.29e+01		c.37.1.1	-6976
1o86A	589	1.31e+01		d.92.1.5	81177
1p4xA	250	1.36e+01		a.4.5.28	87784
				a.4.5.28	87785
1s6bB	119	1.48e+01		a.133.1.2	-1954
3crxA	343	1.55e+01	4crxA	a.60.9.1	18101
				d.163.1.1	42161
1crl	534	1.89e+01	1thg	c.69.1.17	34765
1gp7A	151	1.91e+01		a.133.1.2	76251
1s6bA	119	2.03e+01		a.133.1.2	-1953
1mp9A	198	2.05e+01		a.74.1.2	-1127
				a.74.1.2	-1128
1qgvA	142	2.12e+01	1qgvA	c.47.1.8	33056
1k8kD	300	2.19e+01		d.198.2.1	68309
				d.198.2.1	68310
1ly2A	130	2.27e+01		g.18.1.1	74335
				g.18.1.1	74336
1lffA	119	2.32e+01			
1ab8A	220	2.37e+01	1azsA	d.58.29.1	39414
1dfeA	37	2.42e+01	1dfeA	g.42.1.1	45318
1dgzA	37	2.46e+01	1dfeA	g.42.1.1	45319
2nacA	393	2.58e+01	2nadA	c.2.1.4	30088
				c.23.12.1	31348
1q7rA	219	2.70e+01		c.23.16.1	-6507
1io7A	368	2.87e+01	1f4tA	a.104.1.1	18971
1c8bA	371	2.87e+01	1c8bA	c.56.1.2	59082
1f4tA	368	3.06e+01	1f4tA	a.104.1.1	18973
1lfjB	119	3.09e+01			
1r4yA	136	3.17e+01		d.1.1.3	-8813
3bifA	468	3.25e+01	1bif	c.37.1.7	31962
				c.60.1.4	34008
1poa	118	3.38e+01	1poa	a.133.1.2	19514
1s0yB	71	3.38e+01		d.80.1.1	-10442
1j7nB	776	3.43e+01		d.92.1.14	66412
				d.92.1.14	66413
				d.166.1.1	66414
1bw4	125	3.50e+01	1bw4	b.52.1.2	26900
1ghqB	134	3.57e+01	1ghqB	g.18.1.1	60522
				g.18.1.1	60523
1ox3A	109	3.60e+01		h.1.17.1	-12938
1pz4A	116	3.62e+01		d.106.1.1	-10780