# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1byb	495	1.10e+00	1byb	c.1.8.1	28790
1q6cA	495	1.13e+00		c.1.8.1	-5300
1j7xA	302	2.41e+00		c.14.1.2	66425
1p4xA	250	3.69e+00		a.4.5.28	87784
				a.4.5.28	87785
1v3hA	495	4.18e+00			
1g2rA	100	4.83e+00	1g2rA	d.192.1.1	60231
1earA	147	6.12e+00		b.107.1.1	64875
				d.58.38.1	64876
1mk0A	97	6.62e+00		d.226.1.1	79216
1o86A	589	9.01e+00		d.92.1.5	81177
1c2aA	120	1.05e+01	1c2aA	g.3.13.1	44349
				g.3.13.1	44350
1dfeA	37	1.20e+01	1dfeA	g.42.1.1	45318
1oe0A	230	1.23e+01		c.37.1.1	-6976
1mp9A	198	1.34e+01		a.74.1.2	-1127
				a.74.1.2	-1128
1h6kA	757	1.41e+01		unknown_sccs	60675
				unknown_sccs	60676
				unknown_sccs	60677
1lfjA	119	1.70e+01			
1s7oA	113	1.73e+01			
1gvjA	146	1.79e+01		a.4.5.21	-293
1vk8A	106	1.95e+01			
1t5yA	190	2.01e+01			
1b7yB	785	2.18e+01	1pysB	a.6.1.1	16301
				a.6.1.1	16302
				b.40.4.4	25312
				d.58.13.1	39311
				d.104.1.1	40780
				d.138.1.1	41456
1bif	469	2.22e+01	1bif	c.37.1.7	31961
				c.60.1.4	34003
1ly2A	130	2.48e+01		g.18.1.1	74335
				g.18.1.1	74336
1lnsA	763	2.59e+01		a.40.2.1	78101
				b.18.1.13	78102
				c.69.1.21	78103
1qgvA	142	2.63e+01	1qgvA	c.47.1.8	33056
1d8hA	311	3.02e+01	1d8iA	d.63.1.1	39544
1fiuA	286	3.32e+01	1fiuA	c.52.1.10	33317
1ijyA	130	3.62e+01	1ijxA	a.141.1.1	62517
1c8bA	371	3.80e+01	1c8bA	c.56.1.2	59082
1s6bB	119	3.86e+01		a.133.1.2	-1954
1m4vA	204	3.93e+01		b.40.2.2	74459
				d.15.6.1	74460