# List of top-scoring protein chains for T0237.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vmoA 163 4.90e-01 1vmoA b.77.1.1 27974 1ehiA 377 8.32e-01 1iow c.30.1.2 31716 d.142.1.1 41484 1lkxA 697 2.63e+00 c.37.1.9 73981 1sczA 233 3.85e+00 c.43.1.1 -7326 1bxsA 501 4.57e+00 1bpwA c.82.1.1 35357 1uckA 96 4.89e+00 d.1.1.2 -8805 1uclA 96 6.98e+00 d.1.1.2 -8807 1uzeA 589 7.85e+00 1szxA 198 8.05e+00 a.2.11.1 -138 d.44.1.1 -9739 1i8vA 96 8.56e+00 d.1.1.2 61985 4blcA 506 8.62e+00 1cf9A e.5.1.1 42775 1fnsA 196 9.99e+00 1auq c.62.1.1 34136 1oakA 196 1.02e+01 1auq c.62.1.1 34138 1i70A 96 1.03e+01 d.1.1.2 61862 1uciA 96 1.05e+01 d.1.1.2 -8801 1lniA 96 1.05e+01 d.1.1.2 74046 1sxjE 354 1.05e+01 1m10A 208 1.15e+01 c.62.1.1 74361 1ijbA 202 1.15e+01 c.62.1.1 71229 1n7hA 381 1.18e+01 c.2.1.2 80250 1axcA 261 1.18e+01 1plq d.131.1.2 41392 d.131.1.2 41393 1qnmA 198 1.20e+01 1avmA a.2.11.1 15754 d.44.1.1 38713 1auq 208 1.23e+01 1auq c.62.1.1 34137 1uexC 209 1.25e+01 c.62.1.1 -7972 1gmpA 96 1.30e+01 1rgeA d.1.1.2 36036 1sq0A 214 1.30e+01 c.62.1.1 -7973 1pylA 97 1.38e+01 1ev9A 221 1.40e+01 1pgtA a.45.1.1 17696 c.47.1.5 32990 1ja8A 198 1.46e+01 1avmA a.2.11.1 62813 d.44.1.1 62814 1luwA 198 1.49e+01 a.2.11.1 74267 d.44.1.1 74268 1l1nA 183 1.49e+01 b.47.1.4 73476 1luvA 198 1.50e+01 a.2.11.1 74263 d.44.1.1 74264 1ap6A 198 1.50e+01 1avmA a.2.11.1 15746 d.44.1.1 38705 1n0jA 199 1.50e+01 a.2.11.1 79740 d.44.1.1 79741 1varA 198 1.50e+01 1avmA a.2.11.1 15756 d.44.1.1 38715 1oy0A 281 1.51e+01 c.1.12.8 87543 1tocR 120 1.52e+01 1tocR g.8.1.2 44558 g.8.1.2 44559 1n0nA 199 1.52e+01 a.2.11.1 79750 d.44.1.1 79751 1pm9A 198 1.53e+01 a.2.11.1 -136 d.44.1.1 -9737 1pl4A 198 1.54e+01 a.2.11.1 -132 d.44.1.1 -9733 1qw9A 502 1.54e+01 b.71.1.2 -4677 c.1.8.3 -5348 1pz3A 502 1.55e+01 b.71.1.2 -4673 c.1.8.3 -5344 1em1A 198 1.56e+01 1avmA a.2.11.1 15752 d.44.1.1 38711 1v1pB 213 1.61e+01 1ev4A 221 1.62e+01 1pgtA a.45.1.1 17693 c.47.1.5 32987 1v95A 130 1.65e+01 1g8lA 411 1.65e+01 1g8lA b.85.6.1 60365 b.103.1.1 60366 c.57.1.2 60367 1k5oA 86 1.81e+01 a.165.1.1 77269 1boxA 96 1.82e+01 1rgeA d.1.1.2 36038 1i8nA 126 1.85e+01 1i8nA g.10.1.2 61976 1mq0A 140 1.90e+01 c.97.1.1 -8770 1j2nA 99 1.94e+01 a.165.1.1 84019 1j2mA 99 2.08e+01 a.165.1.1 84018 2ccyA 128 2.24e+01 2ccyA a.24.3.2 16544 1jqsC 68 2.27e+01 i.1.1.1 63239 1jbwA 428 2.39e+01 c.59.1.2 62860 c.72.2.2 62861 1dgfA 497 2.62e+01 1cf9A e.5.1.1 42782 1dghA 498 2.63e+01 1cf9A e.5.1.1 42790 1bccG 81 2.64e+01 1be3G f.23.13.1 43701 1dghB 498 2.65e+01 1cf9A e.5.1.1 42791 1o8uA 257 2.66e+01 c.14.1.3 81194 1qmhA 347 2.66e+01 1qmhA c.47.2.1 33082 d.68.2.1 39568 1o9jA 501 2.71e+01 c.82.1.1 86694 1f4jA 527 2.75e+01 1cf9A e.5.1.1 42798 1se9A 126 2.96e+01 d.15.1.1 -9145 1f3aA 222 3.04e+01 1pgtA a.45.1.1 17701 c.47.1.5 32995 1iru1 213 3.19e+01 1a3p 45 3.21e+01 1egf g.3.11.1 44284 1gsa 316 3.26e+01 1gsa c.30.1.3 31718 d.142.1.1 41477 1uxxX 133 3.31e+01 b.18.1.10 -3107 1jr8A 117 3.35e+01 a.24.15.1 67115 1ohtA 215 3.41e+01 d.118.1.1 87036 1egf 53 3.44e+01 1egf g.3.11.1 44290 1szoA 257 3.45e+01 1ml6A 221 3.47e+01 a.45.1.1 85009 c.47.1.5 85010 1eudA 311 3.48e+01 2scuA c.2.1.8 30312 c.23.4.1 31140 1rv0H 328 3.51e+01 b.19.1.2 -3204 1rvtH 328 3.52e+01 b.19.1.2 -3207 1glv 303 3.67e+01 1gsa c.30.1.3 31721 d.142.1.1 41480 1ly2A 130 3.77e+01 g.18.1.1 74335 g.18.1.1 74336 1ghqB 134 3.83e+01 1ghqB g.18.1.1 60522 g.18.1.1 60523