# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1ap6A	198	3.22e+00	1avmA	a.2.11.1	15746
				d.44.1.1	38705
1vmoA	163	3.56e+00	1vmoA	b.77.1.1	27974
1pl4A	198	3.74e+00		a.2.11.1	-132
				d.44.1.1	-9733
1n0nA	199	4.03e+00		a.2.11.1	79750
				d.44.1.1	79751
1fl0A	171	4.47e+00	1eujA	b.40.4.4	25315
1ne6A	283	5.39e+00		b.82.3.2	-4918
				b.82.3.2	-4919
2ccyA	128	6.52e+00	2ccyA	a.24.3.2	16544
1tocR	120	7.33e+00	1tocR	g.8.1.2	44558
				g.8.1.2	44559
1va4A	279	9.26e+00			
2cy3	118	1.20e+01	3cyr	a.138.1.1	19649
1pqzA	238	1.22e+01			
1qa4A	57	1.48e+01	1qa4A	j.52.1.1	46334
1nriA	306	1.55e+01		c.80.1.3	86123
1rrpB	134	1.65e+01	1rrpB	b.55.1.3	26995
1j2mA	99	1.79e+01		a.165.1.1	84018
1j1jA	240	1.98e+01		a.118.16.1	-1637
1h6qA	168	2.02e+01	1h6qA	b.88.1.2	60692
1gjsA	65	2.33e+01	1gab	a.8.1.2	60578
1hdmA	201	2.45e+01	1iakA	b.1.1.2	21583
				d.19.1.1	38157
2phlA	397	2.58e+01	1dgwA	b.82.1.2	28082
				b.82.1.2	28083
1v84A	253	2.68e+01			
1rgeA	96	2.72e+01	1rgeA	d.1.1.2	36028
1aq5A	47	2.88e+01	1aq5A	h.1.6.1	45577
1g1eB	89	2.95e+01	1g1eB	a.59.1.1	17931
1sxjE	354	3.09e+01			
1fw9A	164	3.36e+01	1fw9A	d.190.1.1	60059
1kmxA	55	3.41e+01		g.25.1.1	72758
1r0tB	62	3.66e+01		unknown_sccs	-12573
1g8eA	116	3.74e+01	1g8eA	a.145.1.1	60346
1gp6A	356	3.76e+01		b.82.2.1	65441
1lniA	96	3.76e+01		d.1.1.2	74046
1js3A	486	3.83e+01		c.67.1.6	67215
1qqp3	220	3.90e+01	1qqp3		
1k5dB	201	3.98e+01		b.55.1.3	68169