# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 6.72e-22 1ci0A b.45.1.1 25753 1nrgA 261 1.17e-18 b.45.1.1 80694 1flmA 122 8.40e-08 1axj b.45.1.1 25747 1ejeA 192 5.35e-03 1ejeA b.45.1.2 25757 1pvtA 238 6.11e-02 c.74.1.1 -8444 1plq 258 1.45e-01 1plq d.131.1.2 41388 d.131.1.2 41389 1obpA 159 1.51e-01 1obpA b.60.1.1 27092 1ko3A 230 1.65e-01 d.157.1.1 -11454 1j58A 385 5.64e-01 b.82.1.2 71531 1t5yA 190 1.18e+00 1cr5A 189 1.22e+00 1cr5A b.52.2.3 26931 d.31.1.1 38465 1gpeA 587 1.38e+00 1gpeA c.3.1.2 30387 d.16.1.1 37951 1gal 583 1.90e+00 1gpeA c.3.1.2 30386 d.16.1.1 37950 1lbvA 252 2.03e+00 e.7.1.1 73813 1lci 550 2.07e+00 1lci e.23.1.1 43349 1r0wA 286 2.16e+00 c.37.1.12 -7158 1pg4A 652 2.33e+00 e.23.1.1 88067 1nar 290 2.46e+00 1nar c.1.8.5 28988 1ohvA 472 3.41e+00 c.67.1.4 -8181 1f52A 468 3.64e+00 1lgr d.15.9.1 37839 d.128.1.1 41169 1lrzA 426 4.15e+00 a.2.7.4 78167 d.108.1.4 78168 d.108.1.4 78169 3seb 238 4.40e+00 3seb b.40.2.2 25184 d.15.6.1 37773 1lxnA 99 4.75e+00 d.58.48.1 84737 1jkxA 212 4.94e+00 c.65.1.1 66813 1oa4A 222 5.05e+00 b.29.1.11 86731 1kbvA 327 5.38e+00 b.6.1.3 68395 b.6.1.3 68396 1mdbA 539 5.71e+00 e.23.1.1 79008 1kr4A 125 5.97e+00 d.58.5.2 72889 1ekrA 161 6.05e+00 1ekrA d.58.21.1 39380 1elqA 390 6.68e+00 1elqA c.67.1.3 34436 1hn2A 159 6.78e+00 b.60.1.1 65890 1gt1A 159 6.78e+00 b.60.1.1 -4436 1kutA 230 6.89e+00 d.143.1.1 73017 1h10A 125 7.70e+00 b.55.1.1 83446 1at0 145 7.81e+00 1at0 b.86.1.1 28374 1lnwA 147 7.90e+00 a.4.5.28 78104 1pvxA 194 7.98e+00 1axkA b.29.1.11 24341 1iwmA 186 8.01e+00 b.125.1.2 83758 1vkbA 161 8.05e+00 1gvp 87 8.05e+00 1gvp b.40.4.7 25369 1vqb 87 8.05e+00 1gvp b.40.4.7 25370 1jpc 109 8.27e+00 1b2pA b.78.1.1 27986 1r6lA 239 8.59e+00 d.14.1.4 -9057 d.101.1.1 -10747 1u9aA 160 8.78e+00 1u9aA d.20.1.1 38333 1eluA 390 8.93e+00 1elqA c.67.1.3 34434 1apmE 350 9.16e+00 1cdkA d.144.1.7 41628 1yna 194 9.86e+00 1axkA b.29.1.11 24335 1rypK 198 1.08e+01 d.153.1.4 41879 1h7zA 194 1.13e+01 1qhvA b.21.1.1 60733 1h80A 464 1.22e+01 b.80.1.8 65714 1ub9A 100 1.24e+01 a.4.5.28 -231 1bo4A 168 1.29e+01 1bo4A d.108.1.1 40798 1b8aA 438 1.32e+01 1b8aA b.40.4.1 25244 d.104.1.1 40765 1hfoA 113 1.35e+01 d.80.1.3 61006 1fzoB 99 1.47e+01 1agdB b.1.1.2 60157 1fzkB 99 1.48e+01 1agdB b.1.1.2 60151 1lk2B 99 1.48e+01 b.1.1.2 -2576 1vk8A 106 1.56e+01 1oaoC 729 1.59e+01 e.26.1.3 86746 1f2aA 215 1.62e+01 1cs8A d.3.1.1 37040 2kinA 238 1.62e+01 1bg2 c.37.1.9 32190 1jb0D 138 1.64e+01 1jb0D d.187.1.1 62823 1b25A 619 1.64e+01 1b25A a.110.1.1 19044 d.152.1.1 41796 1p4kA 295 1.65e+01 d.153.1.5 87772 1gnd 447 1.74e+01 1gnd c.3.1.3 30423 d.16.1.6 37987 1vhsA 175 1.78e+01 d.108.1.1 -10794 1m40A 263 1.85e+01 e.3.1.1 74437 1garA 212 1.89e+01 2gar c.65.1.1 34162 1nulA 152 1.91e+01 1nulA c.61.1.1 34011 1tib 269 1.92e+01 3tgl c.69.1.17 34738 9gafA 295 1.92e+01 1apyA d.153.1.5 42008 1s72E 178 1.92e+01 1ng4A 390 1.93e+01 c.3.1.2 85666 d.16.1.3 85667 1qfjA 232 1.94e+01 1qfjA b.43.4.2 25655 c.25.1.1 31545 1s2wA 295 1.95e+01 c.1.12.7 -5577 1me4A 215 1.99e+01 d.3.1.1 79023 1b16A 254 2.01e+01 1b16A c.2.1.2 29875 1f5aA 513 2.09e+01 1fa0B a.160.1.1 75835 d.218.1.3 75836 d.58.16.1 39337 1uirA 314 2.13e+01 c.66.1.17 -8114 1jx4A 352 2.16e+01 unknown_sccs -10188 unknown_sccs -11898 1ermA 263 2.17e+01 1btl e.3.1.1 42690 1v0wA 506 2.19e+01 1btl 263 2.20e+01 1btl e.3.1.1 42691 1ct9A 553 2.23e+01 1ct9A c.26.2.1 31616 d.153.1.1 41834 1bywA 110 2.23e+01 1bywA d.110.3.6 40912 1j7nA 776 2.25e+01 d.92.1.14 66409 d.92.1.14 66410 d.166.1.1 66411 1d2fA 390 2.30e+01 1d2fA c.67.1.3 34411 1mkmA 249 2.34e+01 a.4.5.33 79242 d.110.2.2 79243 1qa7A 217 2.37e+01 1havA b.47.1.4 26425 1pne 140 2.40e+01 1pne d.110.1.1 40866 1e6pA 499 2.40e+01 1e15A b.72.2.1 59314 c.1.8.5 59315 d.26.3.1 59316 1f0iA 504 2.45e+01 1f0iA d.136.1.2 59566 d.136.1.2 59567 2gar 212 2.53e+01 2gar c.65.1.1 34161 1f5jA 199 2.53e+01 1axkA b.29.1.11 24342 1gt6A 269 2.53e+01 c.69.1.17 76342 1ufyA 122 2.59e+01 d.79.1.2 88489 1mhnA 59 2.61e+01 b.34.9.1 84964 1qg3A 195 2.62e+01 1qg3A b.1.2.1 21993 b.1.2.1 21994 1i7qB 193 2.65e+01 1qdlB c.23.16.1 61902 1kv9A 668 2.66e+01 a.3.1.6 73056 b.70.1.1 73057 1gr3A 160 2.75e+01 b.22.1.1 65476 1rypJ 204 2.80e+01 d.153.1.4 41878 2nlrA 234 2.84e+01 2nlrA b.29.1.11 24344 1fcdA 401 2.86e+01 1fcdA c.3.1.5 30593 c.3.1.5 30594 d.87.1.1 40218 1nif 340 2.91e+01 1nif b.6.1.3 23048 b.6.1.3 23049 1gtmA 419 2.94e+01 1hwyA c.2.1.7 30223 c.58.1.1 33871 1j71A 334 2.96e+01 1eagA b.50.1.2 62669 1ukgA 252 2.97e+01 b.29.1.1 -3390 1meoA 209 2.97e+01 c.65.1.1 79035 1itg 166 3.00e+01 1b9dA c.55.3.2 33661 1qd1A 325 3.03e+01 1qd1A d.58.34.1 39493 d.58.34.1 39494 1inlA 296 3.04e+01 c.66.1.17 66220 1i9zA 347 3.09e+01 1i9yA d.151.1.2 62102 1n3oA 252 3.17e+01 b.29.1.1 79967 1nd4A 264 3.19e+01 d.144.1.6 -11381 1d2sA 170 3.22e+01 1d2sA b.29.1.4 24221 1qfgA 725 3.23e+01 1by5A f.4.3.3 43803 1b4bA 71 3.25e+01 1b4aA d.74.2.1 39718 1n08A 163 3.26e+01 b.43.5.1 79730 1e9gA 286 3.26e+01 1wgjA b.40.5.1 59393 1rl6A 177 3.28e+01 1rl6A d.141.1.1 41473 d.141.1.1 41474 4uagA 437 3.30e+01 4uagA c.5.1.1 30651 c.59.1.1 33952 c.72.2.1 34955 1al3 324 3.43e+01 1al3 c.94.1.1 35835 1kcbA 340 3.44e+01 b.6.1.3 -2950 b.6.1.3 -2951 1p7tA 731 3.50e+01 c.1.13.1 -5600 1prxA 224 3.54e+01 1prxA c.47.1.10 33076 1oi7A 288 3.57e+01 c.2.1.8 87049 c.23.4.1 87050 1jj2E 177 3.59e+01 1ffk1 d.141.1.1 63089 d.141.1.1 63090 1g291 372 3.63e+01 1g291 1eur 365 3.76e+01 1eut b.68.1.1 27607 1o58A 303 3.77e+01 c.79.1.1 -8503 1agqA 135 3.78e+01 1agqA g.17.1.2 44789 1otfA 62 3.79e+01 1otfA d.80.1.1 39820 1q1aA 289 3.82e+01 c.31.1.5 -6781 1havA 217 3.83e+01 1havA b.47.1.4 26423 1jyoA 130 3.84e+01 d.198.1.1 67483 1rz1A 161 3.87e+01 b.45.1.2 -4088 1lj8A 493 3.92e+01 a.100.1.9 78033 c.2.1.6 78034 1ri6A 343 3.93e+01 unknown_sccs -4621 1qrrA 394 3.95e+01 1qrrA c.2.1.2 29824