# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 8.84e-19 1ci0A b.45.1.1 25753 1nrgA 261 5.86e-15 b.45.1.1 80694 1ejeA 192 3.12e-04 1ejeA b.45.1.2 25757 1flmA 122 3.19e-04 1axj b.45.1.1 25747 1ko3A 230 4.05e-02 d.157.1.1 -11454 1pvtA 238 6.03e-01 c.74.1.1 -8444 1cr5A 189 6.72e-01 1cr5A b.52.2.3 26931 d.31.1.1 38465 1hcb 260 1.47e+00 2cba b.74.1.1 27814 1efyA 350 1.65e+00 1a26 a.41.1.1 17413 d.166.1.2 42275 1j58A 385 1.98e+00 b.82.1.2 71531 2cba 260 2.14e+00 2cba b.74.1.1 27821 1t5yA 190 2.56e+00 2kfnA 605 3.20e+00 1xwl c.55.3.5 33682 e.8.1.1 42975 1mjhA 162 4.30e+00 1mjhA c.26.2.4 31639 1n08A 163 4.82e+00 b.43.5.1 79730 1fobA 334 5.63e+00 c.1.8.3 83255 1r6lA 239 6.72e+00 d.14.1.4 -9057 d.101.1.1 -10747 1m40A 263 7.03e+00 e.3.1.1 74437 1lugA 259 7.29e+00 b.74.1.1 -4726 1ermA 263 7.54e+00 1btl e.3.1.1 42690 1mkmA 249 9.07e+00 a.4.5.33 79242 d.110.2.2 79243 1btl 263 1.00e+01 1btl e.3.1.1 42691 1fr7A 260 1.05e+01 2cba b.74.1.1 27828 1jmtA 104 1.12e+01 d.58.7.3 63180 1o69A 394 1.19e+01 c.67.1.4 -8209 1umhA 184 1.19e+01 unknown_sccs -3127 1ct9A 553 1.20e+01 1ct9A c.26.2.1 31616 d.153.1.1 41834 1ihgA 370 1.23e+01 2cpl a.118.8.1 62380 b.62.1.1 62381 1o22A 170 1.25e+01 d.238.1.1 86557 1j9aA 184 1.36e+01 c.55.3.5 84135 1uxaA 194 1.37e+01 1o5uA 101 1.55e+01 b.82.1.8 -4845 1udmA 149 1.68e+01 1cjwA 166 1.74e+01 1cjwA d.108.1.1 40818 1plq 258 1.75e+01 1plq d.131.1.2 41388 d.131.1.2 41389 1e9gA 286 1.92e+01 1wgjA b.40.5.1 59393 1qzzA 374 1.99e+01 a.4.5.29 -277 c.66.1.12 -8045 1lvoA 302 2.07e+01 b.47.1.4 74284 1od5A 492 2.14e+01 b.82.1.2 86832 b.82.1.2 86833 1qyaA 307 2.17e+01 1sdjA 310 2.26e+01 d.21.1.2 -9420 d.21.1.2 -9421 1pq4A 291 2.28e+01 c.92.2.2 -8633 1sefA 274 2.39e+01 1ojrA 274 2.40e+01 c.74.1.1 -8441 1jkxA 212 2.43e+01 c.65.1.1 66813 1fcyA 236 2.45e+01 2lbd a.123.1.1 19282 1mv8A 436 2.47e+01 a.100.1.4 85128 c.2.1.6 85129 c.26.3.1 85130 1aquA 297 2.62e+01 1aquA c.37.1.5 31942 1qr6A 584 2.62e+01 1qr6A c.2.1.7 30293 c.58.1.3 33941 1g7sA 594 2.67e+01 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 1vi1A 345 2.69e+01 unknown_sccs -8466 1pi4A 358 2.96e+01 e.3.1.1 -11774 1nf2A 268 2.97e+01 c.108.1.10 -6842 1csn 298 3.10e+01 1csn d.144.1.7 41664 1oniA 137 3.17e+01 d.79.1.1 87144 1n3lA 372 3.23e+01 c.26.1.1 79966 1eur 365 3.27e+01 1eut b.68.1.1 27607 1bvyF 191 3.60e+01 1bvyF c.23.5.1 31207 1g5cA 170 3.66e+01 1g5cA c.53.2.1 60264 1iznA 286 3.74e+01 e.43.1.1 83847 1acc 735 3.76e+01 1acc f.11.1.1 43828