# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1f7sA 139 4.11e-24 1cof d.109.1.2 40857 1v6fA 151 4.38e-23 1cfyA 143 1.25e-21 1cof d.109.1.2 40858 1cof 143 2.27e-21 1cof d.109.1.2 40860 1cnuA 137 3.33e-21 1cof d.109.1.2 40862 1ak7 174 8.05e-20 1cof d.109.1.2 40864 1m4jA 142 7.92e-19 d.109.1.2 78602 1hqz1 141 4.70e-09 1hqz9 141 5.96e-09 1udmA 149 2.33e-07 1mai 131 2.36e-01 1mai b.55.1.1 26951 1p1cA 199 3.00e-01 c.66.1.16 87669 1khhA 198 4.20e-01 c.66.1.16 68615 1j7lA 264 6.72e-01 d.144.1.6 62697 1svq 114 1.00e+00 1svy d.109.1.1 40832 1j7iA 264 1.01e+00 1j7iA d.144.1.6 62694 1jn5A 140 1.10e+00 d.17.4.2 66921 1svr 114 1.13e+00 1svy d.109.1.1 40833 1qcxA 359 1.18e+00 1qcxA b.80.1.2 28028 1jkgA 140 1.68e+00 d.17.4.2 66795 1svy 114 1.76e+00 1svy d.109.1.1 40831 1cp3A 277 1.79e+00 1pauA c.17.1.1 30992 1ufoA 238 1.82e+00 unknown_sccs -8303 1o6sB 105 2.18e+00 b.1.6.1 81096 1nmeA 146 2.48e+00 c.17.1.1 85874 2vil 126 2.97e+00 2vil d.109.1.1 40830 1poiB 260 3.17e+00 1poiB unknown_sccs 34155 2vik 126 3.35e+00 2vil d.109.1.1 40829 1vjrA 271 4.36e+00 unknown_sccs -6853 1ho1A 242 4.56e+00 1ho1A c.1.24.1 61097 1g5vA 88 4.79e+00 1g5vA b.34.9.1 60292 2nmbA 160 5.04e+00 2nmbA b.55.1.2 26994 1edhA 226 5.13e+00 1edhA b.1.6.1 22198 b.1.6.1 22199 1ex2A 189 5.24e+00 1ex2A c.51.4.2 33225 1ecfB 504 5.34e+00 1ecfB c.61.1.1 34054 d.153.1.1 41821 1suh 146 5.39e+00 1edhA b.1.6.1 22206 1fxjA 331 5.65e+00 1fwyA b.81.1.4 28062 c.68.1.5 34520 1hv9A 456 5.97e+00 1fwyA b.81.1.4 28060 c.68.1.5 34518 1fwyA 331 5.99e+00 1fwyA b.81.1.4 28064 c.68.1.5 34522 1ecfA 504 6.05e+00 1ecfB c.61.1.1 34053 d.153.1.1 41820 1gtmA 419 6.38e+00 1hwyA c.2.1.7 30223 c.58.1.1 33871 1jmkC 230 6.70e+00 c.69.1.22 71747 1fe0A 68 6.84e+00 1cc8A d.58.17.1 39345 1odzA 386 6.96e+00 c.1.8.3 86889 1gw1A 376 7.65e+00 c.1.8.3 76361 1uayA 242 7.97e+00 c.2.1.2 88390 1hjrA 158 8.18e+00 1hjrA c.55.3.6 33727 1a88A 275 8.60e+00 1brt c.69.1.12 34707 1pauA 147 8.85e+00 1pauA c.17.1.1 30994 1j9yA 385 1.00e+01 1j9yA c.1.8.3 62791 1j6uA 469 1.01e+01 c.5.1.1 77094 c.59.1.1 77095 c.72.2.1 77096 1elt 236 1.01e+01 5ptp b.47.1.2 26281 1idk 359 1.07e+01 1qcxA b.80.1.2 28025 1pa1A 310 1.13e+01 c.45.1.2 -7332 1qy5A 269 1.16e+01 d.122.1.1 -10958 1c5kA 439 1.18e+01 1crzA b.68.4.1 27630 c.51.2.1 33212 1qtrA 317 1.19e+01 1qtrA c.69.1.7 34660 1crzA 403 1.22e+01 1crzA b.68.4.1 27629 c.51.2.1 33211 1ptvA 321 1.26e+01 1pty c.45.1.2 32665 1eeoA 321 1.27e+01 1pty c.45.1.2 32655 1mhnA 59 1.28e+01 b.34.9.1 84964 1kepA 348 1.28e+01 c.2.1.2 68536 1oc2A 348 1.28e+01 c.2.1.2 -5753 2hnp 321 1.30e+01 1pty c.45.1.2 32678 1cpn 208 1.30e+01 1axkA b.29.1.2 24175 1qqp2 218 1.32e+01 1qqp2 1cc8A 73 1.33e+01 1cc8A d.58.17.1 39343 1h2xA 710 1.36e+01 b.69.7.1 76598 c.69.1.4 76599 1b00A 127 1.37e+01 3chy c.23.1.1 31122 1pty 321 1.46e+01 1pty c.45.1.2 32656 3cla 213 1.49e+01 3cla c.43.1.1 32610 1n1mA 728 1.50e+01 b.70.3.1 79815 c.69.1.24 79816 1ddmA 135 1.51e+01 2nmbA b.55.1.2 26993 1hnnA 282 1.57e+01 c.66.1.15 65895 1m5wA 243 1.66e+01 c.1.24.1 84836 1afwA 393 1.67e+01 1afwA c.95.1.1 35900 c.95.1.1 35901 1h6rA 236 1.68e+01 d.22.1.1 65683 1nnmA 652 1.71e+01 1pg4A 652 1.71e+01 e.23.1.1 88067 1ixmA 192 1.81e+01 1ixmA d.123.1.1 41114 1acc 735 1.86e+01 1acc f.11.1.1 43828 1mml 265 1.87e+01 1mml e.8.1.2 43015 1crwG 333 1.91e+01 1dssG c.2.1.3 30026 d.81.1.1 39941 1dssG 333 1.91e+01 1dssG c.2.1.3 30022 d.81.1.1 39937 1m6eX 359 1.92e+01 unknown_sccs -8071 1e4yA 214 1.97e+01 1zin c.37.1.1 31901 g.41.2.1 45181 1a99A 344 2.00e+01 1pot c.94.1.1 35812 1pxtB 390 2.01e+01 1afwA c.95.1.1 35906 c.95.1.1 35907 1e8nA 710 2.04e+01 1qfmA b.69.7.1 27675 c.69.1.4 34643 1h2wA 710 2.04e+01 b.69.7.1 76596 c.69.1.4 76597 1qfmA 710 2.04e+01 1qfmA b.69.7.1 27673 c.69.1.4 34641 1qwrA 319 2.09e+01 b.82.1.3 -4880 1p2fA 220 2.13e+01 a.4.6.1 87720 c.23.1.1 87721 1aqjA 421 2.29e+01 2admA c.66.1.27 34242 1ivnA 190 2.38e+01 c.23.10.5 83719 1vkdA 338 2.39e+01 1a9xB 379 2.40e+01 1c3oB c.8.3.1 30732 c.23.16.1 31409 1c3oB 382 2.41e+01 1c3oB c.8.3.1 30744 c.23.16.1 31421 1cs0B 382 2.42e+01 1c3oB c.8.3.1 30740 c.23.16.1 31417 1g38A 393 2.42e+01 2admA c.66.1.27 60235 1o5oA 221 2.43e+01 c.61.1.1 -7954 1pvgA 418 2.46e+01 d.14.1.3 -9032 d.122.1.2 -10965 1fpxA 352 2.47e+01 1fpxA a.4.5.29 59950 c.66.1.12 59951 1akeA 214 2.59e+01 1zin c.37.1.1 31905 g.41.2.1 45185 2admA 421 2.85e+01 2admA c.66.1.27 34238 1kl9A 182 2.93e+01 b.40.4.5 72681 1d2fA 390 2.97e+01 1d2fA c.67.1.3 34411 1a67 108 3.07e+01 1cewI d.17.1.2 38000 1jb0D 138 3.13e+01 1jb0D d.187.1.1 62823 1h2vZ 156 3.14e+01 d.58.7.1 76595 1lldA 319 3.18e+01 3ldh c.2.1.5 30177 d.162.1.1 42144 1aj6 219 3.20e+01 1aj6 d.122.1.2 41106 1uzxA 169 3.23e+01 d.20.1.2 -9409 1p27B 106 3.31e+01 d.58.7.1 -10020 1fvuA 133 3.31e+01 1ixxB d.169.1.1 42345 1hlgA 371 3.32e+01 1hlgA c.69.1.6 34656 1fyhB 229 3.33e+01 1jrhI b.1.2.1 22055 b.1.2.1 22056 1ihjA 98 3.34e+01 1pdr b.36.1.1 62382 1derA 547 3.37e+01 1derA 1xgsA 295 3.40e+01 1bn5 a.4.5.25 16216 d.127.1.1 41153 1pytA 94 3.46e+01 1pytA d.58.3.1 39064 1nb9A 147 3.53e+01 b.43.5.1 85515 1vk0A 206 3.59e+01 c.55.3.5 -7647 1qfjA 232 3.60e+01 1qfjA b.43.4.2 25655 c.25.1.1 31545 1fp2A 352 3.61e+01 1fpxA a.4.5.29 59941 c.66.1.12 59942 1fg9C 245 3.65e+01 1jrhI b.1.2.1 22060 b.1.2.1 22061 1gr5A 547 3.80e+01 i.16.1.1 65478 1g7cB 94 3.81e+01 1b64 d.58.12.1 39308 1aw0 72 3.83e+01 1aw0 d.58.17.1 39342 1j5rA 371 3.85e+01