# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v6fA 151 1.60e-26 1f7sA 139 1.14e-24 1cof d.109.1.2 40857 1hqz1 141 4.21e-20 1m4jA 142 3.22e-19 d.109.1.2 78602 1udmA 149 2.42e-14 1gtmA 419 1.12e-02 1hwyA c.2.1.7 30223 c.58.1.1 33871 1p1cA 199 2.42e-01 c.66.1.16 87669 1mai 131 2.81e-01 1mai b.55.1.1 26951 1svy 114 4.27e-01 1svy d.109.1.1 40831 1ufoA 238 4.70e-01 unknown_sccs -8303 1p8xA 344 5.27e-01 d.109.1.1 -10813 d.109.1.1 -10814 d.109.1.1 -10815 1qcxA 359 9.97e-01 1qcxA b.80.1.2 28028 1o6sB 105 1.55e+00 b.1.6.1 81096 1ex2A 189 1.77e+00 1ex2A c.51.4.2 33225 1nm1G 125 1.90e+00 d.109.1.1 80653 1d4xG 126 1.90e+00 1d0nA d.109.1.1 59109 1pvgA 418 2.16e+00 d.14.1.3 -9032 d.122.1.2 -10965 1jb0D 138 2.51e+00 1jb0D d.187.1.1 62823 1j7lA 264 2.96e+00 d.144.1.6 62697 1hjrA 158 3.25e+00 1hjrA c.55.3.6 33727 1odzA 386 3.28e+00 c.1.8.3 86889 1ixmA 192 3.29e+00 1ixmA d.123.1.1 41114 1a88A 275 3.58e+00 1brt c.69.1.12 34707 1gnd 447 3.96e+00 1gnd c.3.1.3 30423 d.16.1.6 37987 1mdbA 539 4.15e+00 e.23.1.1 79008 1qy5A 269 4.33e+00 d.122.1.1 -10958 1qqqA 264 5.04e+00 1bkpA d.117.1.1 40931 1skoB 130 5.14e+00 1j9yA 385 5.24e+00 1j9yA c.1.8.3 62791 1qo7A 394 5.29e+00 1qo7A c.69.1.11 34697 1j0aA 325 5.39e+00 c.79.1.1 83871 1sqsA 242 5.45e+00 unknown_sccs -6433 1jd0A 263 5.63e+00 2cba b.74.1.1 62888 1ef8A 261 6.00e+00 1ef8A c.14.1.3 30921 1nmeA 146 6.14e+00 c.17.1.1 85874 1kekA 1231 6.44e+00 c.36.1.8 68524 c.36.1.12 68525 c.48.1.3 68526 c.64.1.1 68527 d.58.1.5 68528 1a99A 344 6.49e+00 1pot c.94.1.1 35812 1h2wA 710 6.56e+00 b.69.7.1 76596 c.69.1.4 76597 1f9aA 168 7.09e+00 1f9aA c.26.1.3 31602 1o58A 303 7.17e+00 c.79.1.1 -8503 1nb9A 147 7.17e+00 b.43.5.1 85515 1p3dA 475 7.25e+00 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1b0pA 1231 8.08e+00 c.36.1.8 31831 c.36.1.12 31832 c.48.1.3 33104 c.64.1.1 34157 d.58.1.5 39003 1hjxA 362 8.58e+00 c.1.8.5 83512 d.26.3.1 83513 1qqp2 218 9.30e+00 1qqp2 1evfA 264 1.01e+01 1bkpA d.117.1.1 40932 1b6rA 355 1.05e+01 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 1idk 359 1.10e+01 1qcxA b.80.1.2 28025 1at3A 247 1.25e+01 1at3A b.57.1.1 27021 1goiA 499 1.32e+01 b.72.2.1 65413 c.1.8.5 65414 d.26.3.1 65415 1ddmA 135 1.38e+01 2nmbA b.55.1.2 26993 1qd1A 325 1.39e+01 1qd1A d.58.34.1 39493 d.58.34.1 39494 1bo4A 168 1.49e+01 1bo4A d.108.1.1 40798 1id0A 152 1.56e+01 d.122.1.3 66111 1gyxA 76 1.60e+01 d.80.1.1 76387 1i58A 189 1.64e+01 1b3qA d.122.1.3 61773 1pg4A 652 1.73e+01 e.23.1.1 88067 1k32A 1045 1.73e+01 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 1k7hA 476 1.76e+01 c.76.1.1 72101 1j8bA 112 1.80e+01 d.222.1.1 77101 1j96A 323 1.84e+01 c.1.7.1 71616 1qfmA 710 1.85e+01 1qfmA b.69.7.1 27673 c.69.1.4 34641 1ivnA 190 1.88e+01 c.23.10.5 83719 1j3wA 163 1.90e+01 unknown_sccs -10870 1e6pA 499 1.92e+01 1e15A b.72.2.1 59314 c.1.8.5 59315 d.26.3.1 59316 1ucaA 190 1.94e+01 d.124.1.1 88462 2kinA 238 1.96e+01 1bg2 c.37.1.9 32190 1jkgA 140 1.97e+01 d.17.4.2 66795 1o97D 320 2.00e+01 c.26.2.3 81233 c.31.1.2 81234 1fe0A 68 2.12e+01 1cc8A d.58.17.1 39345 1jenA 267 2.12e+01 1jenA 1jl0A 334 2.16e+01 1jenA d.156.1.1 63155 1r5yA 386 2.20e+01 c.1.20.1 -5626 1odfA 290 2.21e+01 c.37.1.6 -7045 1o5oA 221 2.25e+01 c.61.1.1 -7954 1g291 372 2.26e+01 1g291 5croA 66 2.27e+01 1orc a.35.1.2 17044 1pxgA 382 2.28e+01 c.1.20.1 -5616 1ucdA 190 2.31e+01 1h1aA 191 2.32e+01 b.29.1.11 83450 1dpgA 485 2.35e+01 1dpgA c.2.1.3 30074 d.81.1.5 39989 1mf7A 194 2.36e+01 c.62.1.1 84937 1owqA 361 2.36e+01 1gv3A 248 2.37e+01 a.2.11.1 70585 d.44.1.1 70586 1g55A 343 2.39e+01 1g55A c.66.1.26 34247 1s3zA 165 2.42e+01 1bk7A 190 2.42e+01 1bk7A d.124.1.1 41121 1l2tA 235 2.52e+01 c.37.1.12 73514 1mml 265 2.69e+01 1mml e.8.1.2 43015 1hruA 188 2.71e+01 1hruA d.115.1.1 40926 1vybA 238 2.76e+01 1hnnA 282 2.80e+01 c.66.1.15 65895 1op4A 159 2.86e+01 b.1.6.1 -2794 1ah6 220 2.87e+01 1yer d.122.1.1 41094 1s1pA 331 2.91e+01 c.1.7.1 -5240 1pud 386 3.02e+01 1pud c.1.20.1 29658 1ehiA 377 3.13e+01 1iow c.30.1.2 31716 d.142.1.1 41484 1r6dA 337 3.26e+01 c.2.1.2 -5757 1ujxA 119 3.34e+01 b.26.1.2 -3325 1kcqA 104 3.36e+01 d.109.1.1 68449 1sviA 195 3.49e+01 1e3dA 266 3.50e+01 2frvA e.19.1.1 59188 1mu5A 471 3.57e+01 a.156.1.3 79472 d.14.1.3 79473 d.122.1.2 79474 1p2fA 220 3.59e+01 a.4.6.1 87720 c.23.1.1 87721 1l3kA 196 3.60e+01 d.58.7.1 73539 d.58.7.1 73540 1jmcA 246 3.61e+01 1jmcA b.40.4.3 25300 b.40.4.3 25301 1vkhA 273 3.69e+01 1jj2S 119 3.70e+01 1ffkQ b.34.5.1 63104 1s72T 120 3.70e+01 1ha3A 405 3.80e+01 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 1lx7A 253 3.82e+01 c.56.2.1 74329 1qo3C 137 3.83e+01 1qo3C d.169.1.1 42350 1pytA 94 3.86e+01 1pytA d.58.3.1 39064 1el5A 389 3.88e+01 1b3mA c.3.1.2 30369 d.16.1.3 37937 1ll7A 392 3.89e+01 c.1.8.5 78085 d.26.3.1 78086 1opc 110 3.95e+01 1opc a.4.6.1 16231 1v9dA 340 3.96e+01 unknown_sccs -1762 1euvA 221 3.97e+01 1euvA d.3.1.7 37133 1i4wA 353 3.98e+01 c.66.1.24 66028