# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v6fA 151 2.97e-27 1f7sA 139 4.26e-27 1cof d.109.1.2 40857 1hqz1 141 3.18e-20 1m4jA 142 3.46e-20 d.109.1.2 78602 1udmA 149 2.60e-14 1p1cA 199 3.96e-01 c.66.1.16 87669 1gtmA 419 4.63e-01 1hwyA c.2.1.7 30223 c.58.1.1 33871 1jkgA 140 6.78e-01 d.17.4.2 66795 1hjrA 158 7.51e-01 1hjrA c.55.3.6 33727 1qcxA 359 9.25e-01 1qcxA b.80.1.2 28028 1svy 114 1.01e+00 1svy d.109.1.1 40831 1qy5A 269 1.31e+00 d.122.1.1 -10958 1ex2A 189 1.34e+00 1ex2A c.51.4.2 33225 1nmeA 146 1.49e+00 c.17.1.1 85874 1mai 131 2.10e+00 1mai b.55.1.1 26951 1a88A 275 2.35e+00 1brt c.69.1.12 34707 1p8xA 344 2.85e+00 d.109.1.1 -10813 d.109.1.1 -10814 d.109.1.1 -10815 1odzA 386 3.20e+00 c.1.8.3 86889 1j7lA 264 3.40e+00 d.144.1.6 62697 1h2wA 710 4.01e+00 b.69.7.1 76596 c.69.1.4 76597 1qfmA 710 4.01e+00 1qfmA b.69.7.1 27673 c.69.1.4 34641 1gnd 447 4.14e+00 1gnd c.3.1.3 30423 d.16.1.6 37987 1fe0A 68 4.15e+00 1cc8A d.58.17.1 39345 1a99A 344 4.22e+00 1pot c.94.1.1 35812 1qd1A 325 4.41e+00 1qd1A d.58.34.1 39493 d.58.34.1 39494 1qo7A 394 4.78e+00 1qo7A c.69.1.11 34697 1o6sB 105 4.79e+00 b.1.6.1 81096 1acc 735 4.84e+00 1acc f.11.1.1 43828 1ixmA 192 4.89e+00 1ixmA d.123.1.1 41114 1pvgA 418 4.97e+00 d.14.1.3 -9032 d.122.1.2 -10965 1o2dA 371 5.02e+00 e.22.1.2 86591 1j9yA 385 5.17e+00 1j9yA c.1.8.3 62791 1r6uA 437 5.20e+00 c.26.1.1 -6594 1l2tA 235 6.02e+00 c.37.1.12 73514 1lci 550 6.04e+00 1lci e.23.1.1 43349 1xgsA 295 6.75e+00 1bn5 a.4.5.25 16216 d.127.1.1 41153 1lhpA 312 7.06e+00 c.72.1.5 77960 1f9aA 168 7.11e+00 1f9aA c.26.1.3 31602 1idk 359 7.43e+00 1qcxA b.80.1.2 28025 1h1aA 191 7.82e+00 b.29.1.11 83450 1nm1G 125 7.82e+00 d.109.1.1 80653 1d4xG 126 7.83e+00 1d0nA d.109.1.1 59109 1qqqA 264 8.48e+00 1bkpA d.117.1.1 40931 1uayA 242 9.08e+00 c.2.1.2 88390 1evfA 264 9.38e+00 1bkpA d.117.1.1 40932 1a8s 273 1.03e+01 1brt c.69.1.12 34710 1ddmA 135 1.04e+01 2nmbA b.55.1.2 26993 1ho1A 242 1.05e+01 1ho1A c.1.24.1 61097 1ivnA 190 1.12e+01 c.23.10.5 83719 1pg4A 652 1.18e+01 e.23.1.1 88067 1mdbA 539 1.24e+01 e.23.1.1 79008 1dz3A 130 1.27e+01 1dz3A c.23.1.1 31105 1hnnA 282 1.38e+01 c.66.1.15 65895 1ufoA 238 1.42e+01 unknown_sccs -8303 1mu5A 471 1.50e+01 a.156.1.3 79472 d.14.1.3 79473 d.122.1.2 79474 1r0wA 286 1.59e+01 c.37.1.12 -7158 1jd0A 263 1.62e+01 2cba b.74.1.1 62888 1ujxA 119 1.67e+01 b.26.1.2 -3325 1p2fA 220 1.73e+01 a.4.6.1 87720 c.23.1.1 87721 1k32A 1045 1.80e+01 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 1o5oA 221 1.85e+01 c.61.1.1 -7954 1qmpA 130 1.98e+01 1dz3A c.23.1.1 31106 1pytA 94 2.00e+01 1pytA d.58.3.1 39064 1qqp2 218 2.04e+01 1qqp2 1fgkA 310 2.19e+01 1fgkA d.144.1.7 41693 1i58A 189 2.24e+01 1b3qA d.122.1.3 61773 1owqA 361 2.27e+01 1i4wA 353 2.27e+01 c.66.1.24 66028 1b0pA 1231 2.33e+01 c.36.1.8 31831 c.36.1.12 31832 c.48.1.3 33104 c.64.1.1 34157 d.58.1.5 39003 1j0aA 325 2.35e+01 c.79.1.1 83871 1burS 123 2.38e+01 1rboC 1o8xA 146 2.40e+01 c.47.1.10 86681 1cvrA 435 2.44e+01 1cvrA b.1.18.12 21949 c.17.1.2 31006 1p9qC 256 2.47e+01 1hjxA 362 2.52e+01 c.1.8.5 83512 d.26.3.1 83513 1cc8A 73 2.58e+01 1cc8A d.58.17.1 39343 1ucaA 190 2.76e+01 d.124.1.1 88462 1ucdA 190 2.77e+01 1s3zA 165 2.77e+01 1bk7A 190 2.80e+01 1bk7A d.124.1.1 41121 1sviA 195 2.80e+01 1d5tA 433 2.84e+01 1gnd c.3.1.3 30422 d.16.1.6 37986 1kekA 1231 2.89e+01 c.36.1.8 68524 c.36.1.12 68525 c.48.1.3 68526 c.64.1.1 68527 d.58.1.5 68528 1n8jA 186 2.89e+01 c.47.1.10 85401 1jenA 267 2.92e+01 1jenA 1ohvA 472 2.97e+01 c.67.1.4 -8181 1mml 265 3.01e+01 1mml e.8.1.2 43015 1j1bA 420 3.06e+01 d.144.1.7 -11312 1j3wA 163 3.06e+01 unknown_sccs -10870 1crzA 403 3.07e+01 1crzA b.68.4.1 27629 c.51.2.1 33211 1byqA 228 3.10e+01 1yer d.122.1.1 41100 4uagA 437 3.14e+01 4uagA c.5.1.1 30651 c.59.1.1 33952 c.72.2.1 34955 1ecfA 504 3.18e+01 1ecfB c.61.1.1 34053 d.153.1.1 41820 1kepA 348 3.18e+01 c.2.1.2 68536 1oc2A 348 3.18e+01 c.2.1.2 -5753 1jzuA 157 3.19e+01 b.60.1.1 84271 1fvuA 133 3.22e+01 1ixxB d.169.1.1 42345 1f0xA 571 3.26e+01 1f0xA d.58.32.2 39483 d.145.1.1 41746 1b00A 127 3.34e+01 3chy c.23.1.1 31122 1pxgA 382 3.38e+01 c.1.20.1 -5616 1r5yA 386 3.41e+01 c.1.20.1 -5626 1skoB 130 3.49e+01 1qk8A 146 3.54e+01 1ewxA c.47.1.10 33061 1e4yA 214 3.56e+01 1zin c.37.1.1 31901 g.41.2.1 45181 1bbt1 213 3.56e+01 1qqp1 1l3aA 228 3.57e+01 d.18.1.2 73531 1jj2H 167 3.58e+01 1ffkF d.41.4.1 63093 1l3kA 196 3.62e+01 d.58.7.1 73539 d.58.7.1 73540 1n7oA 721 3.63e+01 a.102.3.2 80259 b.24.1.1 80260 b.30.5.2 80261 1b7yA 350 3.68e+01 1pysA d.104.1.1 40776 1jl0A 334 3.69e+01 1jenA d.156.1.1 63155 1kjwA 295 3.75e+01 b.34.2.1 68643 c.37.1.1 68644 1elt 236 3.76e+01 5ptp b.47.1.2 26281 1qtnA 164 3.77e+01 1pauA c.17.1.1 30999 1bo4A 168 3.81e+01 1bo4A d.108.1.1 40798 1ako 268 3.88e+01 1ako d.151.1.1 41779 1t95A 240 3.90e+01 1kjnA 157 3.97e+01 c.115.1.1 72614