# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v6fA 151 4.72e-30 1f7sA 139 5.10e-30 1cof d.109.1.2 40857 1hqz1 141 6.18e-23 1m4jA 142 3.98e-22 d.109.1.2 78602 1udmA 149 1.77e-15 1gtmA 419 1.72e-02 1hwyA c.2.1.7 30223 c.58.1.1 33871 1p1cA 199 2.83e-02 c.66.1.16 87669 1svy 114 1.01e-01 1svy d.109.1.1 40831 1p8xA 344 1.04e-01 d.109.1.1 -10813 d.109.1.1 -10814 d.109.1.1 -10815 1mai 131 2.76e-01 1mai b.55.1.1 26951 1nm1G 125 3.53e-01 d.109.1.1 80653 1d4xG 126 4.08e-01 1d0nA d.109.1.1 59109 1qcxA 359 5.30e-01 1qcxA b.80.1.2 28028 1o6sB 105 5.33e-01 b.1.6.1 81096 1qqqA 264 6.27e-01 1bkpA d.117.1.1 40931 1hjxA 362 6.28e-01 c.1.8.5 83512 d.26.3.1 83513 1a88A 275 7.19e-01 1brt c.69.1.12 34707 1pvgA 418 7.37e-01 d.14.1.3 -9032 d.122.1.2 -10965 1evfA 264 7.92e-01 1bkpA d.117.1.1 40932 1jb0D 138 7.92e-01 1jb0D d.187.1.1 62823 1qd1A 325 8.48e-01 1qd1A d.58.34.1 39493 d.58.34.1 39494 1ixmA 192 1.01e+00 1ixmA d.123.1.1 41114 1ex2A 189 1.08e+00 1ex2A c.51.4.2 33225 1jkgA 140 1.10e+00 d.17.4.2 66795 1owqA 361 1.12e+00 1f9aA 168 1.31e+00 1f9aA c.26.1.3 31602 1qy5A 269 1.86e+00 d.122.1.1 -10958 1l2tA 235 1.90e+00 c.37.1.12 73514 1hjrA 158 1.98e+00 1hjrA c.55.3.6 33727 1qo7A 394 2.23e+00 1qo7A c.69.1.11 34697 4uagA 437 2.37e+00 4uagA c.5.1.1 30651 c.59.1.1 33952 c.72.2.1 34955 1idk 359 2.74e+00 1qcxA b.80.1.2 28025 1nb9A 147 2.74e+00 b.43.5.1 85515 1pxgA 382 3.33e+00 c.1.20.1 -5616 1r5yA 386 3.41e+00 c.1.20.1 -5626 1a99A 344 3.48e+00 1pot c.94.1.1 35812 1id0A 152 3.54e+00 d.122.1.3 66111 1ef8A 261 3.55e+00 1ef8A c.14.1.3 30921 1r6dA 337 3.69e+00 c.2.1.2 -5757 1qfmA 710 3.69e+00 1qfmA b.69.7.1 27673 c.69.1.4 34641 1h2wA 710 3.88e+00 b.69.7.1 76596 c.69.1.4 76597 1j0aA 325 3.93e+00 c.79.1.1 83871 1ufoA 238 4.18e+00 unknown_sccs -8303 1fe0A 68 4.30e+00 1cc8A d.58.17.1 39345 1b0pA 1231 4.68e+00 c.36.1.8 31831 c.36.1.12 31832 c.48.1.3 33104 c.64.1.1 34157 d.58.1.5 39003 1j7lA 264 4.90e+00 d.144.1.6 62697 1k7hA 476 5.05e+00 c.76.1.1 72101 1i58A 189 5.60e+00 1b3qA d.122.1.3 61773 1r6uA 437 6.07e+00 c.26.1.1 -6594 1o58A 303 6.25e+00 c.79.1.1 -8503 1vicA 262 6.94e+00 c.68.1.13 -8252 1pjjA 271 6.99e+00 1nnjA 271 6.99e+00 a.156.1.2 80669 b.113.1.1 80670 g.39.1.8 80671 1pg4A 652 7.15e+00 e.23.1.1 88067 1o8xA 146 7.30e+00 c.47.1.10 86681 1ucaA 190 7.46e+00 d.124.1.1 88462 1ucdA 190 7.48e+00 1kekA 1231 7.48e+00 c.36.1.8 68524 c.36.1.12 68525 c.48.1.3 68526 c.64.1.1 68527 d.58.1.5 68528 1bk7A 190 7.71e+00 1bk7A d.124.1.1 41121 1fgkA 310 7.84e+00 1fgkA d.144.1.7 41693 1nmeA 146 8.02e+00 c.17.1.1 85874 1a8s 273 8.11e+00 1brt c.69.1.12 34710 1mml 265 8.19e+00 1mml e.8.1.2 43015 1p3dA 475 8.41e+00 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1jd0A 263 8.58e+00 2cba b.74.1.1 62888 1r0wA 286 9.01e+00 c.37.1.12 -7158 1mdbA 539 9.12e+00 e.23.1.1 79008 1dpgA 485 9.35e+00 1dpgA c.2.1.3 30074 d.81.1.5 39989 1cc8A 73 9.45e+00 1cc8A d.58.17.1 39343 1f0xA 571 9.71e+00 1f0xA d.58.32.2 39483 d.145.1.1 41746 1gv3A 248 1.01e+01 a.2.11.1 70585 d.44.1.1 70586 1e4yA 214 1.03e+01 1zin c.37.1.1 31901 g.41.2.1 45181 1o5oA 221 1.04e+01 c.61.1.1 -7954 1obr 326 1.19e+01 1aye c.56.5.2 33828 1b00A 127 1.23e+01 3chy c.23.1.1 31122 1th8A 145 1.23e+01 1nlnA 204 1.24e+01 d.3.1.7 -8897 1azwA 313 1.26e+01 1qtrA c.69.1.7 34658 1qk8A 146 1.30e+01 1ewxA c.47.1.10 33061 1hkkA 364 1.35e+01 c.1.8.5 -5384 d.26.3.1 -9506 1m40A 263 1.37e+01 e.3.1.1 74437 1oxwA 373 1.38e+01 c.19.1.3 87539 1g5bA 221 1.46e+01 1g5bA d.159.1.3 60261 1k3rA 268 1.50e+01 b.40.4.10 72018 c.116.1.2 72019 1om1A 332 1.51e+01 d.144.1.7 -11318 1gdhA 320 1.52e+01 1gdhA c.2.1.4 30095 c.23.12.1 31355 1hruA 188 1.55e+01 1hruA d.115.1.1 40926 1pud 386 1.56e+01 1pud c.1.20.1 29658 1t3cA 421 1.58e+01 1ermA 263 1.60e+01 1btl e.3.1.1 42690 1s3zA 165 1.61e+01 1i4wA 353 1.62e+01 c.66.1.24 66028 1btl 263 1.62e+01 1btl e.3.1.1 42691 1mu5A 471 1.65e+01 a.156.1.3 79472 d.14.1.3 79473 d.122.1.2 79474 1nciA 110 1.68e+01 1edhA b.1.6.1 22191 1pytA 94 1.70e+01 1pytA d.58.3.1 39064 1n8jA 186 1.70e+01 c.47.1.10 85401 1a6o 332 1.71e+01 1a6o 1m4lA 307 1.76e+01 c.56.5.1 78604 1hynP 379 1.78e+01 1hynP d.112.1.2 61408 1i1kA 309 1.79e+01 1daaA e.17.1.1 61533 1l3kA 196 1.83e+01 d.58.7.1 73539 d.58.7.1 73540 1eur 365 1.84e+01 1eut b.68.1.1 27607 1k32A 1045 1.84e+01 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 1gyxA 76 1.85e+01 d.80.1.1 76387 1nf3C 128 1.91e+01 b.36.1.1 85596 1j96A 323 1.92e+01 c.1.7.1 71616 1bbt1 213 1.95e+01 1qqp1 1odzA 386 2.01e+01 c.1.8.3 86889 3cla 213 2.03e+01 3cla c.43.1.1 32610 1uldA 150 2.05e+01 b.29.1.3 -3423 2ctc 307 2.08e+01 1aye c.56.5.1 33802 1m2rA 327 2.09e+01 d.144.1.7 84760 1ivnA 190 2.13e+01 c.23.10.5 83719 1g2iA 166 2.17e+01 1g2iA c.23.16.2 31438 1elt 236 2.18e+01 5ptp b.47.1.2 26281 1auk 489 2.24e+01 1auk c.76.1.2 35030 1qqp1 213 2.26e+01 1qqp1 1iyeA 309 2.27e+01 e.17.1.1 83786 1k66A 149 2.29e+01 c.23.1.1 -6406 1aq0A 306 2.30e+01 1aq0A c.1.8.3 28842 1jl0A 334 2.30e+01 1jenA d.156.1.1 63155 1j9yA 385 2.32e+01 1j9yA c.1.8.3 62791 1qhlA 227 2.33e+01 1qhlA c.37.1.12 32382 1qxoA 388 2.33e+01 unknown_sccs -11161 2kinA 238 2.34e+01 1bg2 c.37.1.9 32190 1ix9A 205 2.34e+01 a.2.11.1 76899 d.44.1.1 76900 1i0hA 205 2.35e+01 1avmA a.2.11.1 15760 d.44.1.1 38685 1orc 71 2.38e+01 1orc a.35.1.2 17054 1d2kA 392 2.40e+01 1d2kA c.1.8.5 29008 d.26.3.1 38442 1ujxA 119 2.42e+01 b.26.1.2 -3325 1ijgA 309 2.46e+01 1fouA e.27.1.1 62493 1ll7A 392 2.46e+01 c.1.8.5 78085 d.26.3.1 78086 1sviA 195 2.52e+01 1havA 217 2.52e+01 1havA b.47.1.4 26423 1tluA 130 2.54e+01 1esgA 213 2.60e+01 1bam c.52.1.3 33286 1uteA 313 2.62e+01 1uteA d.159.1.1 42078 1h1nA 305 2.68e+01 c.1.8.3 70855 1a62 130 2.78e+01 1a62 a.140.3.1 64708 b.40.4.5 64709 1mf7A 194 2.79e+01 c.62.1.1 84937 1mo7A 213 2.84e+01 d.220.1.1 85028 1avpA 204 2.89e+01 1avpA d.3.1.7 37132 1s14A 194 2.92e+01 d.122.1.2 -10973 1g291 372 2.93e+01 1g291 1fy7A 278 2.97e+01 1fy7A d.108.1.1 40817 1dpe 507 2.99e+01 1dpe c.94.1.1 35799 1ddmA 135 2.99e+01 2nmbA b.55.1.2 26993 2mev1 277 3.01e+01 2mev1 1ufbA 127 3.01e+01 a.24.16.3 -635 1jbeA 128 3.12e+01 3chy c.23.1.1 62845 1q0sA 259 3.17e+01 c.66.1.28 -8110 3bamA 213 3.19e+01 1bam c.52.1.3 33288 1r0vA 305 3.21e+01 c.52.2.1 -7572 c.52.2.1 -7573 d.75.1.1 -10344 1o97D 320 3.23e+01 c.26.2.3 81233 c.31.1.2 81234 2hgsA 474 3.29e+01 2hgsA c.30.1.4 31722 d.142.1.6 75997 1qo3C 137 3.30e+01 1qo3C d.169.1.1 42350 1h1aA 191 3.31e+01 b.29.1.11 83450 1o4sA 389 3.36e+01 c.67.1.1 86620 1euvA 221 3.38e+01 1euvA d.3.1.7 37133 1iakB 185 3.45e+01 1iakB b.1.1.2 21626 d.19.1.1 38200 2polA 366 3.47e+01 2polA d.131.1.1 41356 d.131.1.1 41357 d.131.1.1 41358 1n7oA 721 3.47e+01 a.102.3.2 80259 b.24.1.1 80260 b.30.5.2 80261 1lnsA 763 3.48e+01 a.40.2.1 78101 b.18.1.13 78102 c.69.1.21 78103 1nqkA 381 3.55e+01 c.1.16.4 -5607 1o5iA 249 3.56e+01 c.2.1.2 -5833 1ll8A 114 3.57e+01 d.110.3.5 78089 1xgsA 295 3.61e+01 1bn5 a.4.5.25 16216 d.127.1.1 41153 1ltlA 279 3.63e+01 b.40.4.11 84701 1sxjE 354 3.68e+01 1jqgA 433 3.69e+01 c.56.5.1 71791 d.58.3.1 71792 1p2fA 220 3.72e+01 a.4.6.1 87720 c.23.1.1 87721 2tpsA 227 3.73e+01 2tpsA c.1.3.1 28591 1fl0A 171 3.73e+01 1eujA b.40.4.4 25315 1jhnA 424 3.74e+01 b.29.1.12 70060 b.104.1.1 66722 3hhrB 203 3.80e+01 1axiB b.1.2.1 22005 b.1.2.1 22006 1h7sA 365 3.87e+01 d.14.1.3 65705 d.122.1.2 65706 1mmiA 366 3.87e+01 d.131.1.1 -11093 d.131.1.1 -11094 d.131.1.1 -11095 1mngA 203 3.88e+01 1avmA a.2.11.1 15776 d.44.1.1 38701 1npyA 271 3.89e+01 c.2.1.7 85995 c.58.1.5 85996 1dwkA 156 3.91e+01 1dw9A a.35.1.4 17075 d.72.1.1 39606 1ly1A 181 3.92e+01 c.37.1.1 74334 1mhnA 59 3.93e+01 b.34.9.1 84964 1jg5A 83 3.95e+01 d.205.1.1 66666