# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v6fA 151 1.45e-26 1f7sA 139 3.23e-26 1cof d.109.1.2 40857 1m4jA 142 1.22e-20 d.109.1.2 78602 1hqz1 141 6.71e-20 1udmA 149 1.51e-13 1qcxA 359 8.44e-01 1qcxA b.80.1.2 28028 1mml 265 1.76e+00 1mml e.8.1.2 43015 1t0iA 191 1.76e+00 1s4kA 120 2.30e+00 1mai 131 3.90e+00 1mai b.55.1.1 26951 2ae2A 260 4.55e+00 1bdb c.2.1.2 29945 1aszB 490 6.54e+00 1b8aA b.40.4.1 25241 d.104.1.1 40762 1idk 359 7.30e+00 1qcxA b.80.1.2 28025 1h8bA 75 8.21e+00 a.39.1.7 60736 1mo7A 213 8.28e+00 d.220.1.1 85028 1ex2A 189 9.03e+00 1ex2A c.51.4.2 33225 1f8yA 157 9.27e+00 1f8xA c.23.14.1 31395 1fukA 165 1.14e+01 1fukA c.37.1.19 32409 1btl 263 1.22e+01 1btl e.3.1.1 42691 1s5lU 134 1.28e+01 1p1cA 199 1.30e+01 c.66.1.16 87669 1r71A 178 1.43e+01 1dpe 507 1.55e+01 1dpe c.94.1.1 35799 1d4xG 126 1.56e+01 1d0nA d.109.1.1 59109 1uqtA 482 1.57e+01 c.87.1.6 -8593 1n8jA 186 1.61e+01 c.47.1.10 85401 1lhpA 312 1.65e+01 c.72.1.5 77960 1m40A 263 1.68e+01 e.3.1.1 74437 1ja9A 274 1.69e+01 c.2.1.2 62817 1ermA 263 1.78e+01 1btl e.3.1.1 42690 1jx4A 352 1.87e+01 unknown_sccs -10188 unknown_sccs -11898 1ksoA 101 2.05e+01 a.39.1.2 72926 1nm1G 125 2.08e+01 d.109.1.1 80653 1uayA 242 2.11e+01 c.2.1.2 88390 1ef8A 261 2.16e+01 1ef8A c.14.1.3 30921 1fl0A 171 2.23e+01 1eujA b.40.4.4 25315 1ido 192 2.26e+01 1ido c.62.1.1 34139 1ovnA 248 2.27e+01 a.71.1.1 -1096 c.47.1.7 -7477 1lxnA 99 2.29e+01 d.58.48.1 84737 1dszB 85 2.40e+01 2nllB g.39.1.2 45108 1zrn 232 2.40e+01 1qq5A c.108.1.1 43323 1ujxA 119 2.45e+01 b.26.1.2 -3325 1mhnA 59 2.49e+01 b.34.9.1 84964 1k66A 149 2.52e+01 c.23.1.1 -6406 1hruA 188 2.59e+01 1hruA d.115.1.1 40926 1mgqA 83 2.62e+01 b.38.1.1 79099 1m3iA 471 2.63e+01 f.9.1.1 -12374 1pwxA 254 2.67e+01 c.2.1.2 -5858 1a6o 332 2.84e+01 1a6o 1cjxA 357 2.85e+01 1cjxA d.32.1.3 38516 d.32.1.3 38517 1qtqA 553 2.87e+01 1gtrA b.53.1.2 26940 c.26.1.1 31579 1m2rA 327 2.94e+01 d.144.1.7 84760 1uldA 150 2.97e+01 b.29.1.3 -3423 1e9lA 377 3.01e+01 1e9lA c.1.8.5 59395 d.26.3.1 59396 1fvuA 133 3.01e+01 1ixxB d.169.1.1 42345 1obfO 335 3.05e+01 c.2.1.3 86768 d.81.1.1 86769 1okrA 123 3.09e+01 unknown_sccs -235 1hynP 379 3.12e+01 1hynP d.112.1.2 61408 1hyvA 166 3.16e+01 1b9dA c.55.3.2 61424 1ivnA 190 3.16e+01 c.23.10.5 83719 1rifA 282 3.17e+01 unknown_sccs -7265 1ro2A 216 3.46e+01 unknown_sccs -11391 1egiA 147 3.58e+01 1eggA d.169.1.1 42331 1b00A 127 3.67e+01 3chy c.23.1.1 31122 1hh1A 143 3.73e+01 1gefA c.52.1.18 61036 1om1A 332 4.00e+01 d.144.1.7 -11318