CreatePredAlphaCost pred_alpha2k alpha11 T0230.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0230.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 10 near_backbone 3 way_back 3 dry5 10 dry6.5 20 dry8 15 dry12 5 \
	phobic_fit 2 \
	sidechain 6 \
	bystroff 5 \
	soft_clashes 20  backbone_clashes 2 \
	break 30  \
	pred_alpha2k 3 \
	pred_alpha04 3 \
	bonus_constraints 15 \
	hbond_geom 0.1 \
	hbond_geom_backbone 0.1 \
	hbond_geom_beta 0.4 \
	hbond_geom_beta_pair 1.5

HelixConstraint K9 N18		5.0
HelixConstraint L58 K72		5.0
HelixConstraint P96 F102	5.0

# try to form 3-10 helix
Hbond P91.O M94.N	5.0

SheetConstraint D27 V29		Y35 L33	Hbond L33	3	# s0 ^v s1
SheetConstraint Y35 D40  	M49 N44	hbond D36	20.0	# s1 ^v s2
SheetConstraint V45 T52		V79 D86	Hbond M49	20.0	# s2 || s3

# Top constraints from 280.rr  (p > 0.5) 

# file generated by validate2rr
# based on 280 inputs
# using the NN280-240n300.net.28 network
# limited to score of .35 or greater or
# the best 10 scores
# The score is an approximation of the probability
Constraint Y35.CB T50.CB -10. 7.0 12.0 0.819
Constraint W89.CB R99.CB -10. 7.0 12.0 0.802
Constraint T50.CB P87.CB -10. 7.0 12.0 0.732
Constraint L26.CB T52.CB -10. 7.0 12.0 0.71
Constraint P87.CB F102.CB -10. 7.0 12.0 0.702
Constraint W89.CB L98.CB -10. 7.0 12.0 0.695
Constraint M51.CB L83.CB -10. 7.0 12.0 0.684
Constraint Y35.CB M49.CB -10. 7.0 12.0 0.647
Constraint W89.CB F102.CB -10. 7.0 12.0 0.628
Constraint T53.CB F85.CB -10. 7.0 12.0 0.622
Constraint Y35.CB R93.CB -10. 7.0 12.0 0.588
Constraint L33.CB T52.CB -10. 7.0 12.0 0.588
Constraint V34.CB L83.CB -10. 7.0 12.0 0.585
Constraint G25.CA T52.CB -10. 7.0 12.0 0.57
Constraint L26.CB A59.CB -10. 7.0 12.0 0.564
Constraint G25.CA T53.CB -10. 7.0 12.0 0.564
Constraint L33.CB A59.CB -10. 7.0 12.0 0.558
Constraint T50.CB F85.CB -10. 7.0 12.0 0.549
Constraint M49.CB F85.CB -10. 7.0 12.0 0.549
Constraint T50.CB T84.CB -10. 7.0 12.0 0.543
Constraint V45.CB V76.CB -10. 7.0 12.0 0.528
Constraint L33.CB T53.CB -10. 7.0 12.0 0.528
Constraint P54.CB F85.CB -10. 7.0 12.0 0.517
Constraint L33.CB F85.CB -10. 7.0 12.0 0.517
Constraint V47.CB A66.CB -10. 7.0 12.0 0.514
Constraint V34.CB A59.CB -10. 7.0 12.0 0.511
Constraint L33.CB M49.CB -10. 7.0 12.0 0.511
Constraint L33.CB T84.CB -10. 7.0 12.0 0.508
Constraint D36.CB T50.CB -10. 7.0 12.0 0.502
Constraint L33.CB L83.CB -10. 7.0 12.0 0.502