# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1pa4A 116 3.10e-01 d.52.7.1 -9780 1ge9A 184 1.40e+00 1dd5A d.67.3.1 60463 1osdA 72 3.21e+00 1gkuB 1054 3.34e+00 c.37.1.16 65257 c.37.1.16 65258 e.10.1.1 65259 1tib 269 3.47e+00 3tgl c.69.1.17 34738 1gt6A 269 3.75e+00 c.69.1.17 76342 1n62C 288 4.89e+00 d.87.2.1 80094 d.145.1.3 80095 1qhvA 195 4.99e+00 1qhvA b.21.1.1 23842 1hhsA 664 5.28e+00 1hi0P e.8.1.6 61045 1d3hA 367 5.30e+00 1d3gA c.1.4.1 28601 1qj2C 285 6.13e+00 1qj2C 1jn5A 140 7.17e+00 d.17.4.2 66921 1obbA 480 7.23e+00 c.2.1.5 86760 d.162.1.2 86761 1uvjA 664 7.32e+00 e.8.1.6 -11964 1ekeA 230 7.42e+00 1ekeA c.55.3.1 33572 1mwwA 128 8.11e+00 unknown_sccs -10451 1jkgA 140 8.12e+00 d.17.4.2 66795 1mc3A 296 8.66e+00 c.68.1.6 78943 1rvv1 154 9.79e+00 1rvv1 1rvvA 154 9.79e+00 1rvv1 c.16.1.1 30927 1cpzA 68 9.82e+00 1aw0 d.58.17.1 39351 1d3gA 367 1.17e+01 1d3gA c.1.4.1 28600 1hi0P 664 1.17e+01 1hi0P e.8.1.6 61051 1k8wA 327 1.25e+01 b.122.1.1 83094 unknown_sccs -10143 1gudA 288 1.43e+01 c.93.1.1 83326 1cnuA 137 1.61e+01 1cof d.109.1.2 40862 1ej2A 181 1.61e+01 1f9aA c.26.1.3 59414 1oz9A 150 1.62e+01 unknown_sccs -10588 1hybA 181 1.71e+01 1f9aA c.26.1.3 61399 1aw0 72 1.89e+01 1aw0 d.58.17.1 39342 1iqzA 81 1.96e+01 d.58.1.4 66281 2gbp 309 2.14e+01 1gca c.93.1.1 35657 1h6kA 757 2.16e+01 unknown_sccs 60675 unknown_sccs 60676 unknown_sccs 60677 1h2vC 771 2.16e+01 unknown_sccs 76592 unknown_sccs 76593 unknown_sccs 76594 1khyA 148 2.19e+01 a.174.1.1 77410 1zncA 266 2.21e+01 2cba b.74.1.1 27955 1nrzA 164 2.26e+01 c.38.1.1 86131 1rro 108 2.30e+01 1a75A a.39.1.4 17195 1e7uA 961 2.37e+01 1e8xA a.118.1.6 19147 b.7.1.1 23182 d.15.1.5 37630 d.144.1.4 41710 1id0A 152 2.44e+01 d.122.1.3 66111 1f82A 424 2.51e+01 1f82A d.92.1.7 40307 1afi 72 2.53e+01 1aw0 d.58.17.1 39339 1t2aA 375 2.58e+01 c.2.1.2 -5764 1rpjA 288 2.63e+01 2dri c.93.1.1 35656 1iloA 77 2.75e+01 c.47.1.1 66205 1i1gA 141 2.97e+01 a.4.5.32 65982 d.58.4.2 65983 1shsA 147 3.00e+01 1shsA b.15.1.1 23675 1qjcA 158 3.01e+01 1b6tA c.26.1.3 63328 1f83A 425 3.04e+01 1f82A d.92.1.7 40306 1ll2A 333 3.13e+01 c.68.1.14 74005 1e8xA 961 3.25e+01 1e8xA a.118.1.6 19148 b.7.1.1 23183 d.15.1.5 37631 d.144.1.4 41711 1fm0E 150 3.34e+01 1fmaE d.41.5.1 38629 1vpwA 340 3.35e+01 1qpzA a.35.1.5 17087 c.93.1.1 35680 1b6tA 159 3.63e+01 1b6tA c.26.1.3 31600 1lokA 291 3.72e+01 c.56.5.4 78122 1kaeA 434 3.77e+01 c.82.1.2 72247 1qpzA 340 3.81e+01 1qpzA a.35.1.5 17097 c.93.1.1 35673 1n99A 166 3.83e+01 b.36.1.1 85459 b.36.1.1 85460 1iyrA 111 3.85e+01 a.164.1.1 76973 1sur 215 3.99e+01 1sur c.26.2.2 31620