# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qk8A 146 3.39e-02 1ewxA c.47.1.10 33061 1o8xA 146 8.64e-02 c.47.1.10 86681 1i5gA 144 1.02e-01 1ewxA c.47.1.10 61784 1v6fA 151 4.73e-01 1osdA 72 5.16e-01 1v58A 241 5.96e-01 1lu4A 136 1.06e+00 c.47.1.10 -7509 1bed 181 1.14e+00 1fvkA unknown_sccs -7444 1rro 108 3.08e+00 1a75A a.39.1.4 17195 1r26A 125 3.32e+00 c.47.1.1 -7389 1lxiA 139 3.53e+00 g.17.1.2 84735 1l3iA 192 4.06e+00 c.66.1.22 77676 1fcdA 401 4.14e+00 1fcdA c.3.1.5 30593 c.3.1.5 30594 d.87.1.1 40218 1h8mA 140 4.66e+00 1h8mA d.110.4.1 60782 1uc2A 481 5.87e+00 unknown_sccs -11725 1ceo 343 5.98e+00 1ceo c.1.8.3 28808 1eejA 216 6.10e+00 1eejA c.47.1.9 33057 d.17.3.1 38071 1fp3A 402 6.20e+00 1fp3A a.102.1.3 18842 1hd2A 161 7.81e+00 c.47.1.10 60962 1fb6A 105 8.30e+00 1thx c.47.1.1 32739 1kte 105 8.77e+00 1kte c.47.1.1 32771 1sxjE 354 9.47e+00 1e0bA 68 1.11e+01 1e0bA b.34.13.2 37476 1f9mA 112 1.12e+01 1erv c.47.1.1 32736 1em2A 229 1.16e+01 1em2A d.129.3.2 41321 1k87A 669 1.18e+01 a.176.1.1 77286 c.1.23.2 77287 1josA 128 1.30e+01 d.52.7.1 84191 1cl8A 276 1.36e+01 1ckqA c.52.1.1 33230 1q08A 99 1.37e+01 a.6.1.3 -381 3rubS 123 1.40e+01 1rboC d.73.1.1 39616 2acy 98 1.47e+01 2acy d.58.10.1 39298 1ojrA 274 1.48e+01 c.74.1.1 -8441 1f7sA 139 1.57e+01 1cof d.109.1.2 40857 1ctn 540 1.62e+01 1ctn b.1.18.2 21876 c.1.8.5 29005 d.26.3.1 38439 1edqA 540 1.69e+01 1ctn b.1.18.2 21873 c.1.8.5 29002 d.26.3.1 38436 1mfmA 153 1.73e+01 1mfmA b.1.8.1 22246 1a7tA 232 1.77e+01 1a7tA d.157.1.1 42041 1howA 373 1.88e+01 1hcl d.144.1.7 41679 1pa4A 116 1.99e+01 d.52.7.1 -9780 1i1qB 192 2.07e+01 1qdlB c.23.16.1 61544 1h9sA 140 2.10e+01 1b9mA b.40.6.2 60843 b.40.6.2 60844 1iloA 77 2.12e+01 c.47.1.1 66205 1j5pA 253 2.12e+01 c.2.1.3 83092 d.81.1.3 71577 1erv 105 2.17e+01 1erv c.47.1.1 32743 1mwpA 96 2.18e+01 1mwpA d.170.2.1 42453 1qlaB 239 2.27e+01 1qlaB a.1.2.1 15679 d.15.4.2 37707 2trxA 108 2.28e+01 1thx c.47.1.1 32719 1sdjA 310 2.41e+01 d.21.1.2 -9420 d.21.1.2 -9421 1g2oA 268 2.41e+01 1b8oA c.56.2.1 60228 1j08A 226 2.41e+01 c.47.1.2 83855 c.47.1.2 83856 1b9mA 265 2.49e+01 1b9mA a.4.5.8 16118 b.40.6.2 58938 b.40.6.2 58939 1sr9A 644 2.60e+01 1no4A 97 2.63e+01 h.1.24.1 85918 1d1qA 161 2.68e+01 1dg9A c.44.1.1 32642 1o5zA 442 2.68e+01 c.59.1.2 -7939 c.72.2.2 -8418 1shsA 147 2.69e+01 1shsA b.15.1.1 23675 1faaA 124 2.71e+01 1erv c.47.1.1 32738 1thx 115 2.76e+01 1thx c.47.1.1 32732 1b8aA 438 2.78e+01 1b8aA b.40.4.1 25244 d.104.1.1 40765 1ci3M 249 2.85e+01 1hcz b.2.6.1 22480 b.84.2.2 28266 1v0wA 506 2.85e+01 1um0A 365 2.87e+01 1ef8A 261 2.90e+01 1ef8A c.14.1.3 30921 1fvgA 199 2.94e+01 1fvaA d.58.28.1 39408 1oj4A 283 2.98e+01 d.14.1.5 -9088 d.58.26.5 -10133 1cc8A 73 3.05e+01 1cc8A d.58.17.1 39343 1dvoA 152 3.20e+01 1dvoA a.136.1.1 19623 1erp 38 3.21e+01 2erl a.10.1.1 16363 1mwyA 73 3.37e+01 d.58.17.1 79616 1qysA 106 3.40e+01 unknown_sccs -13432 1iqzA 81 3.61e+01 d.58.1.4 66281 1g8kB 133 3.68e+01 1g8jB b.33.1.1 24435 1kl1A 419 3.70e+01 c.67.1.4 72663 1gt6A 269 3.93e+01 c.69.1.17 76342