# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i5gA 144 9.89e-02 1ewxA c.47.1.10 61784 1o8xA 146 1.34e-01 c.47.1.10 86681 1qk8A 146 1.55e-01 1ewxA c.47.1.10 33061 1v58A 241 2.81e-01 1osdA 72 3.84e-01 1lu4A 136 1.40e+00 c.47.1.10 -7509 1v6fA 151 1.75e+00 1j08A 226 2.13e+00 c.47.1.2 83855 c.47.1.2 83856 1bed 181 3.83e+00 1fvkA unknown_sccs -7444 1fcdA 401 4.50e+00 1fcdA c.3.1.5 30593 c.3.1.5 30594 d.87.1.1 40218 1ceo 343 4.67e+00 1ceo c.1.8.3 28808 1a8l 226 4.82e+00 1a8l c.47.1.2 32777 c.47.1.2 32778 1rro 108 5.99e+00 1a75A a.39.1.4 17195 1r26A 125 7.14e+00 c.47.1.1 -7389 2acy 98 7.68e+00 2acy d.58.10.1 39298 1ctn 540 8.22e+00 1ctn b.1.18.2 21876 c.1.8.5 29005 d.26.3.1 38439 1a7tA 232 8.57e+00 1a7tA d.157.1.1 42041 1fp3A 402 8.96e+00 1fp3A a.102.1.3 18842 1f7sA 139 9.40e+00 1cof d.109.1.2 40857 1ii7A 333 9.72e+00 1ii7A d.159.1.4 62415 1uc2A 481 1.03e+01 unknown_sccs -11725 1kte 105 1.04e+01 1kte c.47.1.1 32771 1fb6A 105 1.16e+01 1thx c.47.1.1 32739 1cl8A 276 1.30e+01 1ckqA c.52.1.1 33230 1edqA 540 1.38e+01 1ctn b.1.18.2 21873 c.1.8.5 29002 d.26.3.1 38436 1iloA 77 1.42e+01 c.47.1.1 66205 1k87A 669 1.43e+01 a.176.1.1 77286 c.1.23.2 77287 1kl1A 419 1.43e+01 c.67.1.4 72663 1h8mA 140 1.53e+01 1h8mA d.110.4.1 60782 1nw2A 105 1.54e+01 c.47.1.1 -7380 1josA 128 1.67e+01 d.52.7.1 84191 1n82A 331 1.67e+01 c.1.8.3 -5306 1v0wA 506 1.67e+01 1hd2A 161 1.75e+01 c.47.1.10 60962 1l3iA 192 2.15e+01 c.66.1.22 77676 1eejA 216 2.17e+01 1eejA c.47.1.9 33057 d.17.3.1 38071 1fvkA 189 2.23e+01 1fvkA unknown_sccs -7419 1pa4A 116 2.44e+01 d.52.7.1 -9780 1knb 196 2.45e+01 1qhvA b.21.1.1 23841 1e0bA 68 2.47e+01 1e0bA b.34.13.2 37476 1thx 115 2.49e+01 1thx c.47.1.1 32732 1k3sA 113 2.50e+01 d.198.1.1 68120 1acvA 189 2.53e+01 1fvkA unknown_sccs -7428 1oz9A 150 2.53e+01 unknown_sccs -10588 3rubS 123 2.64e+01 1rboC d.73.1.1 39616 1f0iA 504 2.67e+01 1f0iA d.136.1.2 59566 d.136.1.2 59567 1mo9A 523 2.71e+01 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 1g8kB 133 2.78e+01 1g8jB b.33.1.1 24435 2trxA 108 2.79e+01 1thx c.47.1.1 32719 1hjrA 158 2.79e+01 1hjrA c.55.3.6 33727 1gudA 288 2.81e+01 c.93.1.1 83326 1gnlA 544 2.84e+01 e.26.1.1 70287 1qlaB 239 2.92e+01 1qlaB a.1.2.1 15679 d.15.4.2 37707 1b8aA 438 2.92e+01 1b8aA b.40.4.1 25244 d.104.1.1 40765 2hft 218 3.00e+01 1boy b.1.2.1 21951 b.1.2.1 21952 1qysA 106 3.00e+01 unknown_sccs -13432 1kmqA 184 3.03e+01 c.37.1.8 84412 1i1qB 192 3.21e+01 1qdlB c.23.16.1 61544 1qwkA 317 3.24e+01 c.1.7.1 -5237 1iupA 282 3.26e+01 c.69.1.10 76815 1eudB 396 3.28e+01 2scuB c.23.4.1 31150 d.142.1.4 41571 1mkaA 171 3.32e+01 1mkaA d.38.1.2 38543 1f9mA 112 3.39e+01 1erv c.47.1.1 32736 1mwyA 73 3.43e+01 d.58.17.1 79616 1is1A 185 3.47e+01 d.67.3.1 83704 1eemA 241 3.52e+01 1eemA a.45.1.1 17717 c.47.1.5 33011 1ef8A 261 3.57e+01 1ef8A c.14.1.3 30921 1tfr 305 3.62e+01 1tfr a.60.7.1 18081 c.120.1.2 33351 1jfuA 186 3.65e+01 c.47.1.10 62940 1erv 105 3.74e+01 1erv c.47.1.1 32743 1faaA 124 3.87e+01 1erv c.47.1.1 32738