# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1osdA	72	2.67e-01			
1d3gA	367	8.95e-01	1d3gA	c.1.4.1	28600
1hhsA	664	9.99e-01	1hi0P	e.8.1.6	61045
1ekeA	230	1.49e+00	1ekeA	c.55.3.1	33572
1uvjA	664	1.51e+00		e.8.1.6	-11964
1o8xA	146	1.92e+00		c.47.1.10	86681
1oz9A	150	2.13e+00		unknown_sccs	-10588
1qk8A	146	2.69e+00	1ewxA	c.47.1.10	33061
1v58A	241	2.75e+00			
2acy	98	3.70e+00	2acy	d.58.10.1	39298
1i5gA	144	4.01e+00	1ewxA	c.47.1.10	61784
1pa4A	116	4.07e+00		d.52.7.1	-9780
1cznA	169	4.10e+00	1rcf	c.23.5.1	31181
1uumA	372	4.77e+00		c.1.4.1	-5193
1iyrA	111	4.97e+00		a.164.1.1	76973
1rro	108	5.48e+00	1a75A	a.39.1.4	17195
1ayl	541	5.81e+00	1ayl	c.91.1.1	64718
				c.109.1.1	64719
1iloA	77	7.68e+00		c.47.1.1	66205
1r26A	125	7.84e+00		c.47.1.1	-7389
1mwyA	73	8.01e+00		d.58.17.1	79616
1lu4A	136	8.13e+00		c.47.1.10	-7509
1kte	105	8.41e+00	1kte	c.47.1.1	32771
1n62C	288	8.66e+00		d.87.2.1	80094
				d.145.1.3	80095
1jkgA	140	9.24e+00		d.17.4.2	66795
1obbA	480	1.22e+01		c.2.1.5	86760
				d.162.1.2	86761
1rcf	169	1.40e+01	1rcf	c.23.5.1	31170
1qj2C	285	1.41e+01	1qj2C		
1oboA	169	1.49e+01		c.23.5.1	86776
1i36A	264	1.60e+01		a.100.1.8	71108
				c.2.1.6	71109
1v6fA	151	1.67e+01			
1qhvA	195	1.75e+01	1qhvA	b.21.1.1	23842
1tib	269	1.79e+01	3tgl	c.69.1.17	34738
1ll2A	333	1.83e+01		c.68.1.14	74005
1o0pA	104	1.88e+01		d.58.7.1	86535
1gt6A	269	1.89e+01		c.69.1.17	76342
1gudA	288	2.01e+01		c.93.1.1	83326
1gv3A	248	2.19e+01		a.2.11.1	70585
				d.44.1.1	70586
1fb6A	105	2.22e+01	1thx	c.47.1.1	32739
1e3pA	757	2.29e+01	1e3hA	a.4.9.1	16258
				b.40.4.5	25328
				d.14.1.4	37574
				d.14.1.4	37575
				d.52.3.1	38811
				d.101.1.1	40697
				d.101.1.1	40698
1id0A	152	2.63e+01		d.122.1.3	66111
1k3sA	113	2.65e+01		d.198.1.1	68120
1cl8A	276	2.71e+01	1ckqA	c.52.1.1	33230
1mwwA	128	3.01e+01		unknown_sccs	-10451
1mi3A	322	3.04e+01		c.1.7.1	-5257
1hh8A	213	3.07e+01	1e96B	a.118.8.1	61042
1uocA	289	3.39e+01		unknown_sccs	-7671
1rpjA	288	3.51e+01	2dri	c.93.1.1	35656
1px5A	349	3.58e+01		unknown_sccs	-1139
				unknown_sccs	-9793
1atiA	505	3.76e+01	1atiA	c.51.1.1	33196
				d.104.1.1	40745