# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ml8A 134 9.24e-21 d.227.1.2 85013 1qwiA 143 2.27e-18 d.227.1.1 -11183 1n2fA 142 5.65e-18 d.227.1.1 79853 1uspA 139 1.58e-16 d.227.1.1 -11179 1ukkA 142 2.36e-16 d.227.1.1 -11206 1b8aA 438 6.25e-01 1b8aA b.40.4.1 25244 d.104.1.1 40765 1ryjA 70 7.71e-01 d.15.3.2 -9179 1jeyA 609 8.62e-01 1jeqA unknown_sccs -4426 unknown_sccs -7990 1josA 128 1.12e+00 d.52.7.1 84191 1oe4A 247 1.38e+00 c.18.1.3 86895 1dkzA 219 1.43e+00 1dkzA unknown_sccs -445 unknown_sccs -3060 6paxA 133 1.48e+00 6paxA a.4.1.5 64758 a.4.1.5 64759 1jkeA 145 1.67e+00 c.110.1.1 66791 1ii7A 333 1.76e+00 1ii7A d.159.1.4 62415 1q4rA 112 1.83e+00 d.58.4.4 -9943 1phk 298 1.91e+00 1cdkA d.144.1.7 41635 1bv1 159 2.11e+00 1bv1 d.129.3.1 41313 1a6o 332 2.12e+00 1a6o 1glcG 501 2.16e+00 1glcG c.55.1.4 33519 c.55.1.4 33520 1vgyA 393 2.39e+00 c.56.5.4 -7882 d.58.19.1 -10106 1m2rA 327 2.52e+00 d.144.1.7 84760 1ekrA 161 2.58e+00 1ekrA d.58.21.1 39380 1i76A 163 2.79e+00 1hfc d.92.1.11 61877 1meoA 209 3.14e+00 c.65.1.1 79035 1r8hA 87 3.20e+00 d.58.8.1 -10041 1in0A 163 3.63e+00 d.58.49.1 83694 d.58.49.1 83695 1hyeA 313 3.90e+00 2cmd c.2.1.5 61400 d.162.1.1 61401 1k78A 149 4.24e+00 a.4.1.5 68255 a.4.1.5 68256 1eg9A 449 4.41e+00 1ndoA b.33.1.2 24443 d.129.3.3 41322 1c0pA 363 4.83e+00 1an9A c.4.1.2 30647 d.16.1.3 37934 1jvwA 167 4.91e+00 d.26.1.1 71907 1om1A 332 4.97e+00 d.144.1.7 -11318 1bcpB 199 5.09e+00 1bcpB b.40.2.1 25120 d.169.1.2 42429 1a8d 452 5.17e+00 1a8d b.29.1.6 24262 b.42.4.2 25607 1e5pA 151 5.33e+00 1bj7 b.60.1.1 59272 1qm4A 396 5.69e+00 1mxb d.130.1.1 41350 d.130.1.1 41351 d.130.1.1 41352 1bu6O 501 5.72e+00 1glcG c.55.1.4 33499 c.55.1.4 33500 1v7oA 165 5.81e+00 unknown_sccs -10249 1o7nA 449 6.15e+00 b.33.1.2 81162 d.129.3.3 81163 2bc2A 227 6.21e+00 1a7tA d.157.1.1 42031 1otgA 125 6.27e+00 1otgA d.80.1.2 39831 1j7gA 144 6.33e+00 c.110.1.1 84130 1a62 130 6.52e+00 1a62 a.140.3.1 64708 b.40.4.5 64709 1gvdA 52 7.33e+00 a.4.1.3 83338 1mmq 170 7.88e+00 1hfc d.92.1.11 40396 1o98A 511 8.14e+00 c.105.1.1 86684 c.76.1.3 86685 1lfaA 187 8.17e+00 1ido c.62.1.1 34122 1k0mA 241 8.18e+00 a.45.1.1 67949 c.47.1.5 67950 1kutA 230 8.46e+00 d.143.1.1 73017 2sak 121 8.92e+00 2sak d.15.5.1 37711 1b3tA 147 9.49e+00 1b3tA d.58.8.1 39228 1r6lA 239 1.06e+01 d.14.1.4 -9057 d.101.1.1 -10747 1mqoA 227 1.06e+01 1qvbA 481 1.06e+01 1qvbA c.1.8.4 28983 3pvaA 335 1.07e+01 3pvaA d.153.1.3 41854 1j0hA 588 1.09e+01 b.1.18.2 77027 b.71.1.1 77028 c.1.8.1 77029 1j98A 157 1.12e+01 1j98A d.185.1.2 62755 1cfr 285 1.23e+01 1cfr c.52.1.7 33312 1ftrA 296 1.27e+01 1ftrA d.58.33.1 39485 d.58.33.1 39486 1fgyA 127 1.27e+01 1faoA b.55.1.1 26976 1fgs 428 1.28e+01 1fgs c.59.1.2 33959 c.72.2.2 34962 1vi1A 345 1.29e+01 unknown_sccs -8466 1kmqA 184 1.30e+01 c.37.1.8 84412 1eqjA 511 1.33e+01 1ejjA c.105.1.1 59495 c.76.1.3 59496 1v6fA 151 1.45e+01 1f60B 94 1.46e+01 1b64 d.58.12.1 39307 1jbwA 428 1.49e+01 c.59.1.2 62860 c.72.2.2 62861 1a8vA 121 1.50e+01 1a62 a.140.3.1 64712 b.40.4.5 64713 1di2A 69 1.53e+01 1di2A d.50.1.1 38780 1cjxA 357 1.59e+01 1cjxA d.32.1.3 38516 d.32.1.3 38517 1pyaA 81 1.63e+01 1pyaA d.155.1.1 42026 1mjnA 179 1.65e+01 c.62.1.1 79210 1fxrA 64 1.73e+01 1fxd d.58.1.4 38993 1nq7A 244 1.79e+01 a.123.1.1 -1682 1s5lH 66 1.79e+01 1ng4A 390 1.83e+01 c.3.1.2 85666 d.16.1.3 85667 1nepA 130 1.83e+01 b.1.18.7 80440 2pvaA 345 1.87e+01 3pvaA d.153.1.3 41850 1gypA 358 1.89e+01 1dssG c.2.1.3 30004 d.81.1.1 39919 1jvr 137 1.93e+01 1jvr a.61.1.2 18132 1o0wA 252 1.93e+01 a.149.1.1 80751 d.50.1.1 80752 1e5eA 404 1.98e+01 1ibjA c.67.1.3 59265 1brmA 367 1.99e+01 1brmA c.2.1.3 30030 d.81.1.1 39945 1vhiA 142 1.99e+01 1b3tA d.58.8.1 39230 1xyzA 347 2.03e+01 1taxA c.1.8.3 28804 1rpxA 230 2.09e+01 1rpxA c.1.2.2 28536 1fm4A 159 2.27e+01 1bv1 d.129.3.1 76186 1pzgA 331 2.33e+01 c.2.1.5 -5931 d.162.1.1 -11498 1psuA 140 2.34e+01 d.38.1.5 88285 1h2bA 359 2.36e+01 b.35.1.2 -3679 c.2.1.1 -5703 1gx3A 284 2.38e+01 d.3.1.5 70678 1k47A 337 2.45e+01 d.14.1.5 72040 d.58.26.4 72041 1kzfA 230 2.47e+01 d.108.1.3 73354 1fsz 372 2.48e+01 1fsz c.32.1.1 31750 d.79.2.1 39802 1gd1O 334 2.51e+01 1dssG c.2.1.3 29962 d.81.1.1 39877 1btkA 169 2.52e+01 1btkA b.55.1.1 26959 1mb4A 370 2.54e+01 c.2.1.3 78908 d.81.1.1 78909 1fnoA 417 2.56e+01 c.56.5.4 75841 d.58.19.1 70145 1a79A 171 2.58e+01 1a79A c.52.2.1 33340 d.75.1.1 39739 1o3yA 166 2.64e+01 c.37.1.8 86618 1dwnA 127 2.64e+01 1dwnA d.85.1.1 40141 1g3qA 237 2.70e+01 1hyqA c.37.1.10 60237 1gs5A 258 2.77e+01 c.73.1.2 70395 1n71A 180 2.88e+01 d.108.1.1 85370 1psdA 409 2.88e+01 1psdA c.2.1.4 30097 c.23.12.1 31357 d.58.18.1 39354 1uayA 242 2.91e+01 c.2.1.2 88390 3thiA 371 3.00e+01 2thiA c.94.1.1 35792 1tx4B 178 3.08e+01 1ctqA c.37.1.8 32045 1o5xA 248 3.13e+01 c.1.1.1 -5157 1is1A 185 3.18e+01 d.67.3.1 83704 1f5mA 180 3.26e+01 1f5mB d.110.2.1 40895 3pmgA 561 3.27e+01 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 1qfgA 725 3.29e+01 1by5A f.4.3.3 43803 1o6yA 299 3.30e+01 d.144.1.7 81106 1is2A 661 3.32e+01 a.29.3.2 71382 a.29.3.2 71383 e.6.1.2 71384 1kl1A 419 3.33e+01 c.67.1.4 72663 1q1gA 276 3.33e+01 c.56.2.1 -7846 1vizA 240 3.34e+01 c.1.4.1 -5212 1o7tA 309 3.36e+01 c.94.1.1 86645 1e8cA 498 3.40e+01 c.98.1.1 59377 c.59.1.1 59378 c.72.2.1 59379 1p1mA 406 3.51e+01 b.92.1.4 87696 c.1.9.9 87697 1cg2A 393 3.53e+01 1cg2A c.56.5.4 33844 d.58.19.1 39360 1lyxA 248 3.56e+01 c.1.1.1 78304 1c24A 263 3.60e+01 1c24A d.127.1.1 41148 1dmlB 36 3.69e+01 1dmlB 1dhs 344 3.77e+01 1dhs c.31.1.1 31727 1icxA 155 3.77e+01 d.129.3.1 71191 1lldA 319 3.80e+01 3ldh c.2.1.5 30177 d.162.1.1 42144 1jg8A 347 3.83e+01 1jg8A c.67.1.1 62946 1sjyA 159 3.94e+01 d.113.1.1 -10908 1n3yA 198 3.97e+01 c.62.1.1 79976 1burA 475 3.97e+01 1burA