# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ml8A 134 7.20e-17 d.227.1.2 85013 1n2fA 142 1.71e-15 d.227.1.1 79853 1uspA 139 4.24e-14 d.227.1.1 -11179 1qwiA 143 4.29e-14 d.227.1.1 -11183 1ukkA 142 6.32e-13 d.227.1.1 -11206 1i76A 163 1.01e+00 1hfc d.92.1.11 61877 1tx4B 178 3.76e+00 1ctqA c.37.1.8 32045 1uu3A 310 3.87e+00 d.144.1.7 -11339 1h1wA 289 4.59e+00 d.144.1.7 83460 1j7nA 776 4.98e+00 d.92.1.14 66409 d.92.1.14 66410 d.166.1.1 66411 2gdm 153 5.25e+00 2gdm a.1.1.2 15212 1kq3A 376 6.18e+00 e.22.1.2 68790 1fgyA 127 6.45e+00 1faoA b.55.1.1 26976 1jq5A 370 6.75e+00 e.22.1.2 67084 1hlgA 371 6.83e+00 1hlgA c.69.1.6 34656 1br1B 150 7.30e+00 1wdcC a.39.1.5 17309 1bpyA 335 7.83e+00 1bpyA a.60.6.1 17980 a.60.12.1 75819 d.218.1.2 75820 1pgvA 197 8.11e+00 c.10.1.1 88073 1kmqA 184 9.57e+00 c.37.1.8 84412 1t15A 214 1.00e+01 c.15.1.3 -6284 c.15.1.3 -6285 1bv1 159 1.01e+01 1bv1 d.129.3.1 41313 1l0bA 229 1.05e+01 c.15.1.3 73391 c.15.1.3 73392 1fxrA 64 1.05e+01 1fxd d.58.1.4 38993 2btvA 901 1.07e+01 2btvA e.28.1.1 43376 1nxiA 132 1.11e+01 d.58.47.1 86381 1mmq 170 1.18e+01 1hfc d.92.1.11 40396 3pvaA 335 1.18e+01 3pvaA d.153.1.3 41854 1r5tA 142 1.19e+01 1mzhA 225 1.30e+01 c.1.10.1 79698 1ryjA 70 1.32e+01 d.15.3.2 -9179 1j77A 209 1.35e+01 1j77A a.132.1.2 62674 1gx3A 284 1.45e+01 d.3.1.5 70678 1m1cA 680 1.61e+01 e.42.1.1 78395 1hnnA 282 1.62e+01 c.66.1.15 65895 1mxiA 160 1.65e+01 c.116.1.1 79646 1fm4A 159 1.65e+01 1bv1 d.129.3.1 76186 1oe4A 247 1.74e+01 c.18.1.3 86895 1di1A 300 1.83e+01 1di1A a.128.1.4 19446 1hfc 169 1.85e+01 1hfc d.92.1.11 40335 1lk5A 229 1.87e+01 unknown_sccs 73960 d.58.40.1 73961 1qusA 322 1.90e+01 1ltm d.2.1.6 36991 1dbfA 127 1.92e+01 2chsA d.79.1.2 39761 1eswA 500 1.92e+01 1cwyA c.1.8.1 59500 1mvcA 240 1.94e+01 a.123.1.1 79499 1cbf 285 1.97e+01 1cbf c.90.1.1 35587 4blmA 265 2.22e+01 1btl e.3.1.1 42721 1nu7D 282 2.40e+01 unknown_sccs -433 unknown_sccs -434 1fxlA 167 2.43e+01 1b7fA d.58.7.1 39183 d.58.7.1 39184 1hz4A 373 2.51e+01 a.118.8.2 65960 1qyrA 252 2.53e+01 1ii7A 333 2.58e+01 1ii7A d.159.1.4 62415 1k3yA 221 2.61e+01 a.45.1.1 77245 c.47.1.5 77246 1fit 147 2.73e+01 1fit d.13.1.1 37499 1m7bA 184 2.73e+01 c.37.1.8 74572 1khvA 516 2.74e+01 e.8.1.4 68627 1q4rA 112 2.78e+01 d.58.4.4 -9943 1oglA 283 2.79e+01 unknown_sccs -1512 1sj1A 66 2.79e+01 1j8rA 196 2.81e+01 1j8rA b.2.3.3 62745 2pvaA 345 2.82e+01 3pvaA d.153.1.3 41850 1k0sA 151 2.91e+01 b.40.7.1 67969 5pal 109 2.92e+01 1a75A a.39.1.4 17215 1nbuA 119 2.93e+01 d.96.1.3 -10699 1nciA 110 2.97e+01 1edhA b.1.6.1 22191 1l1lA 739 3.06e+01 c.7.1.4 73470 1v61A 132 3.08e+01 1f3aA 222 3.08e+01 1pgtA a.45.1.1 17701 c.47.1.5 32995 1ejfA 125 3.19e+01 1ejfA b.15.1.2 23683 2fhi 147 3.23e+01 1fit d.13.1.1 37505 1p90A 145 3.25e+01 unknown_sccs -7684 1qmgA 524 3.27e+01 1qmgA a.100.1.2 18785 c.2.1.6 30182 1phk 298 3.32e+01 1cdkA d.144.1.7 41635 1ggzA 148 3.33e+01 a.39.1.5 70176 1in0A 163 3.38e+01 d.58.49.1 83694 d.58.49.1 83695 1lg7A 182 3.51e+01 d.213.1.1 73888 1riqA 465 3.54e+01 unknown_sccs -1295 d.104.1.1 -10769 1fvzA 271 3.59e+01 1fvzA 1yghA 164 3.61e+01 1yghA d.108.1.1 40802 1v7oA 165 3.69e+01 unknown_sccs -10249 1c0eA 157 3.89e+01 1dg9A c.44.1.1 32638 1fyhB 229 3.94e+01 1jrhI b.1.2.1 22055 b.1.2.1 22056