CreatePredAlphaCost pred_alpha2k alpha11 T0227.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0227.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 3 near_backbone 3 way_back 3 dry5 6 dry6.5 8 dry8 5 dry12 2 \
	phobic_fit 2 \
	sidechain 6 \
	bystroff 5 \
	soft_clashes 15  backbone_clashes 2 \
	break 40  \
	pred_alpha2k 3 \
	pred_alpha04 3 \
	constraints 10 \
	hbond_geom 0.1 \
	hbond_geom_backbone 0.1 \
	hbond_geom_beta 0.4 \
	hbond_geom_beta_pair 1.5

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.


# from T0227.t2k.dssp-ehl2.constraints
StrandConstraint	G7	V10	0.6212
HelixConstraint 	A15	I18	0.6772
StrandConstraint	L38	V41	0.7725
HelixConstraint 	V61	K70	0.7684
HelixConstraint 	E75	A80	0.7728
StrandConstraint	Y88	V91	0.7032
StrandConstraint	V111	D115	0.7991


# from t04-thin30.mi, thin35, thin40, thin50:
Constraint P4.CB S16.CB -10. 7.0 12.0 	1

# from t04-thin35, t04-thin40
Constraint K31.CB D84.CB -10. 7.0 12.0 0.5