# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fce 629 2.38e+00 1fce a.102.1.2 18836 1faeA 629 2.52e+00 1fce a.102.1.2 18837 1m4zA 238 2.52e+00 b.34.12.1 78630 1g9gA 629 2.69e+00 a.102.1.2 83279 1qmhA 347 4.96e+00 1qmhA c.47.2.1 33082 d.68.2.1 39568 1b0zA 445 6.13e+00 2pgi c.80.1.2 35309 2pgi 445 6.13e+00 2pgi c.80.1.2 35308 1fgjA 546 7.40e+00 1fgjA a.138.1.3 19679 1b35B 255 7.61e+00 1b35B b.121.4.1 23334 1ibzA 112 7.81e+00 1ibzA b.6.1.4 62237 1pd3A 58 8.00e+00 unknown_sccs -767 1phk 298 8.45e+00 1cdkA d.144.1.7 41635 1jx4A 352 9.88e+00 unknown_sccs -10188 unknown_sccs -11898 1hv9A 456 1.07e+01 1fwyA b.81.1.4 28060 c.68.1.5 34518 1k3eA 156 1.08e+01 d.198.1.1 68103 1c7qA 445 1.10e+01 2pgi c.80.1.2 35307 1f6fB 210 1.28e+01 1axiB b.1.2.1 22033 b.1.2.1 22034 1b43A 340 1.43e+01 1a76 a.60.7.1 18092 c.120.1.2 33362 1b3qA 379 1.54e+01 1b3qA a.30.2.1 16993 b.40.7.1 25454 d.122.1.3 41112 1fxjA 331 1.56e+01 1fwyA b.81.1.4 28062 c.68.1.5 34520 1i7kA 179 1.60e+01 1u9aA d.20.1.1 61889 1mmoB 384 1.67e+01 1mtyB a.25.1.2 16768 1mveA 243 1.69e+01 b.29.1.2 85140 1fz1C 389 1.70e+01 1mtyB a.25.1.2 16746 1yprA 125 1.75e+01 3nul d.110.1.1 40888 1mtyB 384 1.84e+01 1mtyB a.25.1.2 16740 1d3zA 76 1.93e+01 1ubi d.15.1.1 37592 1idrA 136 1.94e+01 1dlyA a.1.1.1 62301 1qydA 313 1.95e+01 c.2.1.2 -5786 1vasA 137 1.97e+01 2end a.18.1.1 16404 1ibyA 112 1.99e+01 1ibzA b.6.1.4 62233 1fwyA 331 2.33e+01 1fwyA b.81.1.4 28064 c.68.1.5 34522 1q2wA 308 2.39e+01 b.47.1.4 88355 1f6vA 91 2.46e+01 1f6vA a.49.1.1 17791 1sra 151 2.50e+01 1sra a.39.1.3 17190 1no1A 126 2.53e+01 a.179.1.1 85913 3pviA 157 2.65e+01 3pviA c.52.1.6 33300 1rgxA 114 2.74e+01 1ilk 151 2.82e+01 2ilk a.26.1.3 16886 2end 138 2.83e+01 2end a.18.1.1 16400 1ogwA 76 2.89e+01 d.15.1.1 87001 1jl2A 156 3.00e+01 c.55.3.1 66822 1ubi 76 3.08e+01 1ubi d.15.1.1 37584 1g0sA 209 3.09e+01 1g0sA d.113.1.1 60187 1udiI 83 3.19e+01 1ugiA d.17.5.1 38124 1o0pA 104 3.20e+01 d.58.7.1 86535 1i1qB 192 3.21e+01 1qdlB c.23.16.1 61544 1lqtA 456 3.21e+01 c.3.1.1 74198 c.4.1.1 74199 1ubq 76 3.31e+01 1ubi d.15.1.1 37585 1rifA 282 3.43e+01 unknown_sccs -7265 1sb8A 352 3.43e+01 1dgjA 907 3.48e+01 1alo a.56.1.1 17909 d.15.4.2 37694 d.41.1.1 38585 d.133.1.1 41415 1giqA 413 3.51e+01 d.166.1.1 76224 d.166.1.1 76225 1ughI 82 3.52e+01 1ugiA d.17.5.1 38133 1ey4A 149 3.59e+01 1snc b.40.1.1 24815 1b0xA 94 3.64e+01 1b4fA a.60.1.2 17933 1ic2A 81 3.65e+01 h.1.5.1 62247 1ugiA 84 3.81e+01 1ugiA d.17.5.1 38125 1v54I 73 3.95e+01 f.23.3.1 -12108 2occI 73 3.95e+01 2occI f.23.3.1 43523