# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ufoA 238 2.98e-02 unknown_sccs -8303 1c7qA 445 3.97e-02 2pgi c.80.1.2 35307 1b0zA 445 7.45e-02 2pgi c.80.1.2 35309 2pgi 445 7.45e-02 2pgi c.80.1.2 35308 1moq 368 1.70e-01 1moq c.80.1.1 35302 1j5xA 342 7.61e-01 c.80.1.1 71591 1rqlA 267 2.03e+00 c.108.1.3 -6814 1kyqA 274 2.48e+00 c.2.1.11 73281 e.37.1.1 73282 1hl8A 449 2.83e+00 unknown_sccs -4690 unknown_sccs -5361 1fezA 256 3.16e+00 1fezA c.108.1.3 43343 1hl9A 449 3.31e+00 unknown_sccs -4694 unknown_sccs -5365 1m22A 503 3.42e+00 c.117.1.1 78464 3csuA 310 4.20e+00 3csuA c.78.1.1 35094 c.78.1.1 35095 1f0kA 364 4.56e+00 1f0kA c.87.1.2 35465 1pe0A 197 4.61e+00 c.23.16.2 88045 1itwA 741 4.85e+00 c.77.1.2 76793 1m3sA 186 5.34e+00 c.80.1.3 78573 1fdo 715 5.51e+00 2napA b.52.2.2 26917 c.81.1.1 35325 1at1A 310 5.90e+00 3csuA c.78.1.1 35168 c.78.1.1 35169 1p5fA 189 5.91e+00 c.23.16.2 -6508 1aa6 715 6.07e+00 2napA b.52.2.2 26916 c.81.1.1 35324 1dqsA 393 6.13e+00 1dqsA e.22.1.1 43347 1edoA 244 6.30e+00 1ybvA c.2.1.2 29896 1usgA 346 6.54e+00 c.93.1.1 -8635 1fdi 715 7.10e+00 2napA b.52.2.2 26918 c.81.1.1 35326 1ls1A 295 7.16e+00 a.24.13.1 78170 c.37.1.10 78171 1qatB 622 7.26e+00 1djxB a.39.1.7 17355 b.7.1.1 23172 c.1.18.1 29600 1efdN 266 7.55e+00 1efdN c.92.2.1 35597 1jayA 212 7.94e+00 c.2.1.6 66478 1c3oB 382 7.95e+00 1c3oB c.8.3.1 30744 c.23.16.1 31421 1qfmA 710 8.35e+00 1qfmA b.69.7.1 27673 c.69.1.4 34641 1i2aA 219 8.80e+00 e.24.1.1 -12012 1ng1 294 9.18e+00 1ng1 a.24.13.1 16961 c.37.1.10 32272 1vhxA 150 9.59e+00 unknown_sccs -7663 1cjsA 219 9.60e+00 1cjsA e.24.1.1 43354 1qasA 622 9.68e+00 1djxB a.39.1.7 17340 b.7.1.1 23157 c.1.18.1 29585 1e8nA 710 9.77e+00 1qfmA b.69.7.1 27675 c.69.1.4 34643 1dar 691 9.89e+00 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1fzqA 181 9.89e+00 1hurA c.37.1.8 32060 1jpnA 296 1.01e+01 a.24.13.1 67039 c.37.1.10 67040 1a87 321 1.05e+01 1a87 f.1.1.1 43380 1gq2A 555 1.06e+01 c.2.1.7 70308 c.58.1.3 70309 1pea 385 1.06e+01 1pea c.93.1.1 35662 1poxA 585 1.10e+01 1poxA c.31.1.3 31731 c.36.1.5 31793 c.36.1.9 31794 1vi6A 208 1.16e+01 c.23.15.1 -6489 1a9xB 379 1.20e+01 1c3oB c.8.3.1 30732 c.23.16.1 31409 1h2wA 710 1.25e+01 b.69.7.1 76596 c.69.1.4 76597 1orvA 728 1.25e+01 b.70.3.1 87354 c.69.1.24 87355 1jb9A 316 1.29e+01 1fnc b.43.4.2 62840 c.25.1.1 62841 1ybvA 283 1.36e+01 1ybvA c.2.1.2 29948 2pia 321 1.44e+01 2pia b.43.4.2 25663 c.25.1.2 31553 d.15.4.2 37704 1h2xA 710 1.52e+01 b.69.7.1 76598 c.69.1.4 76599 1cs0B 382 1.56e+01 1c3oB c.8.3.1 30740 c.23.16.1 31417 1ny6A 267 1.57e+01 c.37.1.20 -7221 1g0oA 283 1.59e+01 1ybvA c.2.1.2 60181 1bvzA 585 1.65e+01 1bvzA b.1.18.2 21856 b.71.1.1 27783 c.1.8.1 28770 1g6hA 257 1.70e+01 1gajA c.37.1.12 60318 1jaxA 212 1.72e+01 c.2.1.6 66476 2ak3A 226 1.79e+01 1zin c.37.1.1 31892 g.41.2.1 45193 1d3uB 201 1.79e+01 1aisB a.74.1.2 18386 a.74.1.2 18387 1cdzA 96 1.82e+01 1cdzA c.15.1.1 30925 1m6jA 261 1.93e+01 c.1.1.1 78693 1djxB 624 1.96e+01 1djxB a.39.1.7 17343 b.7.1.1 23160 c.1.18.1 29588 1aisB 200 2.05e+01 1aisB a.74.1.2 18384 a.74.1.2 18385 1g291 372 2.06e+01 1g291 1j6zA 376 2.14e+01 1yagA c.55.1.1 62667 c.55.1.1 62668 1b0uA 262 2.17e+01 1b0uA c.37.1.12 32370 1e8gA 560 2.23e+01 1qltA d.58.32.1 39455 d.145.1.1 41718 1ge9A 184 2.28e+01 1dd5A d.67.3.1 60463 2ng1 293 2.31e+01 1ng1 a.24.13.1 16962 c.37.1.10 32273 1fjgB 256 2.38e+01 1fjfB c.23.15.1 31400 1ivnA 190 2.52e+01 c.23.10.5 83719 1djxA 624 2.54e+01 1djxB a.39.1.7 17342 b.7.1.1 23159 c.1.18.1 29587 1o5kA 306 2.59e+01 c.1.10.1 -5482 1j4nA 271 2.63e+01 f.19.1.1 71510 1jgjA 217 2.66e+01 1c3wA f.13.1.1 62952 1iqrA 420 2.69e+01 a.99.1.1 66275 c.28.1.1 66276 1ekxA 311 2.87e+01 3csuA c.78.1.1 35088 c.78.1.1 35089 1garA 212 2.92e+01 2gar c.65.1.1 34162 1qh5A 260 2.94e+01 1qh5A d.157.1.2 42057 1rvv1 154 3.02e+01 1rvv1 1rvvA 154 3.02e+01 1rvv1 c.16.1.1 30927 1pg5A 299 3.02e+01 1k3tA 359 3.07e+01 c.2.1.3 72022 d.81.1.1 72023 2ts1 419 3.12e+01 2ts1 c.26.1.1 31564 1ac5 483 3.22e+01 1ac5 c.69.1.5 34653 1auoA 218 3.23e+01 1auoA c.69.1.14 34716 1l7vC 249 3.27e+01 c.37.1.12 73674 1cem 363 3.28e+01 1cem a.102.1.2 18826 1pmmA 466 3.36e+01 c.67.1.6 -8159 1qltA 560 3.45e+01 1qltA d.58.32.1 39457 d.145.1.1 41720 1h2sA 225 3.46e+01 f.13.1.1 76578 1n1mA 728 3.51e+01 b.70.3.1 79815 c.69.1.24 79816 1nxqA 251 3.51e+01 c.2.1.2 86388 1e9rA 437 3.58e+01 c.37.1.11 64827 1ujpA 271 3.59e+01 c.1.2.4 -5177 1uu1A 335 3.59e+01 c.67.1.1 -8146 1n55A 251 3.61e+01 c.1.1.1 80007 1lwdA 413 3.70e+01 c.77.1.1 78265 1g8yA 279 3.82e+01 1g8yA c.37.1.11 32302 1p9aG 290 3.86e+01 c.10.2.7 87990 1iciA 256 3.93e+01 1iciA c.31.1.5 62266 1itkA 731 3.96e+01 a.93.1.3 71417 a.93.1.3 71418 1kxu 333 3.96e+01 1jkw a.74.1.1 18358 a.74.1.1 18359 1cf9A 753 3.98e+01 1cf9A c.23.16.3 31441 e.5.1.1 42815 1nlfA 279 3.99e+01 c.37.1.11 85850