# This file is the result of combining several RDB files, specifically # T0226.t04.dssp-ebghstl.rdb (weight 1.53986) # T0226.t04.stride-ebghtl.rdb (weight 1.24869) # T0226.t04.str2.rdb (weight 1.54758) # T0226.t04.alpha.rdb (weight 0.659012) # These files were combined by translating their predictions into EHL # predictions with tables generated by compare-real, and then combining # those predictions with weights proportional to their mutual information # with the EHL alphabet. The comments from the individual files follow. # # Comments from T0226.t04.dssp-ebghstl.rdb # ============================================ # TARGET T0226 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0226.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 63.6457 # # ============================================ # Comments from T0226.t04.stride-ebghtl.rdb # ============================================ # TARGET T0226 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0226.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 63.6457 # # ============================================ # Comments from T0226.t04.str2.rdb # ============================================ # TARGET T0226 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0226.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 63.6457 # # ============================================ # Comments from T0226.t04.alpha.rdb # ============================================ # TARGET T0226 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-alpha-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 ABCDEFGHIST ) # The input amino acid frequencies were determined from # alignment T0226.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 63.6457 # # ============================================ Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.0600 0.0417 0.8982 2 R 0.0573 0.0644 0.8782 3 D 0.0732 0.0830 0.8438 4 L 0.0583 0.1274 0.8144 5 D 0.0548 0.1007 0.8445 6 R 0.1024 0.0907 0.8069 7 E 0.2145 0.1176 0.6679 8 E 0.4687 0.1210 0.4103 9 T 0.7720 0.0569 0.1710 10 Y 0.8389 0.0391 0.1220 11 L 0.8246 0.0415 0.1339 12 V 0.6579 0.0595 0.2827 13 D 0.2563 0.0493 0.6944 14 R 0.1655 0.0871 0.7474 15 T 0.2230 0.1021 0.6748 16 G 0.2375 0.1608 0.6016 17 L 0.2441 0.2547 0.5011 18 A 0.2734 0.4573 0.2693 19 L 0.3055 0.4952 0.1994 20 E 0.3426 0.5048 0.1526 21 L 0.2897 0.5802 0.1302 22 R 0.2351 0.5871 0.1779 23 D 0.1869 0.5824 0.2307 24 L 0.1806 0.5307 0.2888 25 V 0.1465 0.4466 0.4069 26 G 0.1381 0.2321 0.6299 27 T 0.1646 0.1533 0.6820 28 G 0.1444 0.0540 0.8016 29 P 0.1454 0.0486 0.8061 30 V 0.1034 0.0277 0.8689 31 P 0.0517 0.0900 0.8583 32 G 0.0483 0.0735 0.8782 33 E 0.1430 0.0572 0.7998 34 A 0.2266 0.0406 0.7329 35 Y 0.1871 0.0197 0.7932 36 P 0.1438 0.0314 0.8247 37 G 0.1107 0.0246 0.8647 38 P 0.1524 0.0658 0.7818 39 H 0.2985 0.0819 0.6196 40 A 0.4685 0.0531 0.4784 41 A 0.7030 0.0316 0.2655 42 L 0.6761 0.0385 0.2855 43 G 0.4761 0.0230 0.5009 44 Y 0.2644 0.0681 0.6674 45 G 0.1319 0.0580 0.8100 46 E 0.1045 0.1404 0.7551 47 G 0.1079 0.2270 0.6650 48 Q 0.1247 0.4627 0.4126 49 F 0.0662 0.7141 0.2196 50 A 0.0420 0.8064 0.1515 51 A 0.0463 0.8300 0.1237 52 L 0.0764 0.7796 0.1440 53 L 0.1213 0.6429 0.2357 54 S 0.1076 0.3757 0.5167 55 G 0.0978 0.1717 0.7305 56 L 0.1112 0.0381 0.8507 57 P 0.1033 0.0990 0.7977 58 D 0.1386 0.1622 0.6992 59 W 0.2141 0.1803 0.6056 60 G 0.1948 0.0981 0.7071 61 E 0.1499 0.0994 0.7507 62 E 0.0677 0.0769 0.8555 63 G 0.0895 0.0457 0.8647 64 T 0.4179 0.0206 0.5615 65 L 0.8412 0.0085 0.1503 66 F 0.9057 0.0061 0.0882 67 L 0.9205 0.0054 0.0741 68 L 0.9056 0.0077 0.0867 69 E 0.8534 0.0152 0.1314 70 G 0.5975 0.0347 0.3678 71 G 0.2382 0.0454 0.7164 72 Y 0.2106 0.0595 0.7299 73 D 0.1766 0.1015 0.7219 74 L 0.1283 0.2357 0.6360 75 G 0.1604 0.2590 0.5806 76 E 0.1179 0.3837 0.4984 77 A 0.1016 0.3314 0.5670 78 A 0.0618 0.1966 0.7416 79 G 0.0609 0.0416 0.8975 80 M 0.3241 0.0090 0.6668 81 A 0.7447 0.0050 0.2502 82 L 0.9211 0.0032 0.0758 83 L 0.9291 0.0034 0.0674 84 A 0.9253 0.0035 0.0712 85 E 0.8907 0.0041 0.1052 86 T 0.5279 0.0159 0.4562 87 G 0.1112 0.0610 0.8279 88 R 0.0716 0.0623 0.8661 89 A 0.1771 0.1898 0.6330 90 R 0.4021 0.2891 0.3088 91 V 0.5549 0.2997 0.1453 92 V 0.5241 0.3516 0.1242 93 R 0.5085 0.3700 0.1215 94 V 0.4363 0.3419 0.2218 95 G 0.4782 0.1661 0.3557 96 F 0.2138 0.1150 0.6712 97 R 0.1141 0.0804 0.8054 98 P 0.0360 0.0838 0.8801 99 G 0.0350 0.0421 0.9229 100 V 0.2410 0.0118 0.7472 101 E 0.6161 0.0125 0.3714 102 V 0.9022 0.0045 0.0933 103 H 0.9144 0.0040 0.0816 104 I 0.8713 0.0055 0.1232 105 P 0.5601 0.0071 0.4328 106 P 0.1469 0.0250 0.8281 107 S 0.0633 0.0960 0.8406 108 P 0.0405 0.1291 0.8304 109 L 0.0751 0.1392 0.7858 110 A 0.0958 0.1697 0.7346 111 P 0.0986 0.3325 0.5689 112 Y 0.0873 0.5357 0.3771 113 R 0.1220 0.5246 0.3533 114 Y 0.1128 0.5621 0.3251 115 L 0.0641 0.6994 0.2365 116 R 0.0653 0.7440 0.1906 117 F 0.0739 0.7602 0.1659 118 L 0.1138 0.6950 0.1912 119 L 0.1243 0.6553 0.2204 120 L 0.0869 0.5930 0.3201 121 A 0.0330 0.6337 0.3333 122 T 0.0443 0.5017 0.4540 123 G 0.0632 0.3904 0.5464 124 R 0.0479 0.4752 0.4769 125 E 0.0228 0.7457 0.2316 126 E 0.0243 0.7542 0.2215 127 V 0.0251 0.6929 0.2819 128 L 0.0601 0.5641 0.3758 129 R 0.0612 0.3652 0.5736 130 S 0.0698 0.2042 0.7260 131 V 0.0054 0.9367 0.0578 132 D 0.0047 0.9558 0.0395 133 E 0.0047 0.9575 0.0378 134 A 0.0053 0.9533 0.0415 135 L 0.0053 0.9508 0.0439 136 L 0.0051 0.9449 0.0500 137 E 0.0050 0.9395 0.0555 138 E 0.0051 0.9333 0.0616 139 R 0.0057 0.9187 0.0756 140 R 0.0066 0.8705 0.1229 141 R 0.0103 0.7493 0.2404 142 L 0.0476 0.4589 0.4935 143 G 0.0371 0.0630 0.8999 144 P 0.0284 0.1335 0.8381 145 E 0.0522 0.1057 0.8421 146 V 0.0902 0.0352 0.8745 147 P 0.0943 0.0404 0.8653 148 V 0.0372 0.6187 0.3441 149 E 0.0258 0.5898 0.3844 150 E 0.0383 0.4784 0.4832 151 N 0.0878 0.3381 0.5741 152 P 0.0051 0.9301 0.0647 153 A 0.0047 0.9556 0.0397 154 K 0.0047 0.9600 0.0353 155 F 0.0047 0.9612 0.0341 156 L 0.0048 0.9571 0.0381 157 A 0.0047 0.9586 0.0367 158 Y 0.0047 0.9595 0.0358 159 T 0.0051 0.9537 0.0412 160 L 0.0053 0.9366 0.0581 161 L 0.0075 0.8740 0.1186 162 E 0.0129 0.6650 0.3221 163 R 0.0391 0.3775 0.5834 164 L 0.0783 0.0410 0.8807 165 P 0.1508 0.0600 0.7892 166 L 0.6360 0.0605 0.3035 167 F 0.6985 0.0529 0.2486 168 Y 0.6097 0.0391 0.3513 169 S 0.2357 0.0407 0.7236 170 P 0.0486 0.1666 0.7847 171 L 0.0399 0.2038 0.7563 172 F 0.0722 0.2197 0.7082 173 R 0.0894 0.3646 0.5460 174 P 0.0836 0.5402 0.3761 175 L 0.0112 0.8806 0.1082 176 E 0.0067 0.9376 0.0557 177 G 0.0047 0.9560 0.0393 178 A 0.0047 0.9594 0.0359 179 V 0.0047 0.9570 0.0384 180 Q 0.0047 0.9599 0.0355 181 T 0.0047 0.9600 0.0353 182 L 0.0048 0.9557 0.0395 183 F 0.0051 0.9470 0.0479 184 A 0.0063 0.9257 0.0680 185 R 0.0094 0.8835 0.1071 186 V 0.0225 0.6989 0.2786 187 A 0.0488 0.3757 0.5756 188 K 0.0764 0.3199 0.6037 189 S 0.1100 0.2080 0.6819 190 L 0.0805 0.2691 0.6505 191 S 0.1067 0.1933 0.7001 192 L 0.1317 0.1121 0.7561 193 T 0.0865 0.0294 0.8841 194 P 0.0720 0.0286 0.8995 195 P 0.0716 0.0283 0.9001 196 P 0.0781 0.0963 0.8256 197 S 0.0681 0.2518 0.6802 198 A 0.0416 0.4205 0.5379 199 L 0.0573 0.3350 0.6077 200 E 0.0694 0.2726 0.6579 201 F 0.1382 0.1940 0.6678 202 F 0.2146 0.2005 0.5848 203 L 0.3123 0.4093 0.2785 204 V 0.3160 0.4565 0.2275 205 G 0.3477 0.4175 0.2348 206 L 0.2847 0.4740 0.2413 207 E 0.2500 0.4699 0.2801 208 A 0.1673 0.4224 0.4103 209 R 0.0983 0.3813 0.5204 210 H 0.0724 0.2376 0.6899 211 E 0.0568 0.2207 0.7226 212 Q 0.0763 0.1139 0.8098 213 G 0.0689 0.0511 0.8800 214 D 0.1114 0.0263 0.8622 215 P 0.2365 0.1104 0.6531 216 L 0.5168 0.0721 0.4111 217 A 0.6783 0.0274 0.2944 218 A 0.8882 0.0110 0.1008 219 V 0.9137 0.0075 0.0788 220 L 0.9091 0.0056 0.0853 221 L 0.8013 0.0129 0.1857 222 G 0.3633 0.0137 0.6230 223 P 0.1119 0.0621 0.8260 224 G 0.0568 0.1093 0.8339 225 E 0.0607 0.3418 0.5974 226 E 0.0561 0.5112 0.4327 227 A 0.0804 0.5590 0.3606 228 A 0.0929 0.5518 0.3553 229 L 0.1138 0.6386 0.2476 230 A 0.1015 0.6809 0.2175 231 K 0.0610 0.8543 0.0846 232 E 0.0573 0.8694 0.0733 233 I 0.0473 0.8756 0.0772 234 L 0.0412 0.8557 0.1030 235 E 0.0201 0.8665 0.1134 236 S 0.0206 0.7814 0.1980 237 R 0.0420 0.6303 0.3277 238 V 0.0970 0.4674 0.4356 239 D 0.0842 0.3752 0.5406 240 A 0.1747 0.3040 0.5213 241 L 0.4098 0.1620 0.4282 242 A 0.5349 0.1004 0.3647 243 E 0.6144 0.0701 0.3155 244 V 0.4124 0.0386 0.5489 245 P 0.2577 0.0343 0.7080 246 A 0.1095 0.1000 0.7905 247 T 0.0604 0.1460 0.7937 248 G 0.0486 0.1554 0.7960 249 A 0.0467 0.3469 0.6064 250 N 0.0376 0.6007 0.3617 251 R 0.0354 0.7759 0.1887 252 L 0.0106 0.9138 0.0756 253 A 0.0056 0.9398 0.0546 254 Q 0.0061 0.9385 0.0554 255 V 0.0058 0.9476 0.0466 256 M 0.0051 0.9553 0.0396 257 A 0.0048 0.9583 0.0369 258 L 0.0050 0.9587 0.0363 259 W 0.0048 0.9581 0.0371 260 Y 0.0056 0.9532 0.0412 261 R 0.0056 0.9522 0.0422 262 M 0.0070 0.9456 0.0474 263 A 0.0063 0.9488 0.0449 264 W 0.0056 0.9541 0.0403 265 T 0.0049 0.9583 0.0369 266 A 0.0049 0.9595 0.0356 267 Y 0.0048 0.9600 0.0352 268 Y 0.0047 0.9606 0.0347 269 L 0.0050 0.9594 0.0356 270 A 0.0055 0.9545 0.0400 271 L 0.0068 0.9348 0.0583 272 L 0.0159 0.8697 0.1144 273 Y 0.0479 0.4157 0.5364 274 G 0.0380 0.0389 0.9231 275 V 0.1059 0.0201 0.8741 276 D 0.1083 0.0187 0.8730 277 P 0.0290 0.2488 0.7222 278 G 0.0298 0.2383 0.7319 279 D 0.0660 0.3007 0.6332 280 H 0.1033 0.3556 0.5411 281 G 0.1529 0.3657 0.4814 282 L 0.1546 0.5503 0.2951 283 L 0.0582 0.8057 0.1360 284 E 0.0400 0.8496 0.1104 285 R 0.0329 0.8672 0.0999 286 L 0.0426 0.8320 0.1254 287 R 0.0382 0.7632 0.1986 288 E 0.0364 0.6880 0.2756 289 V 0.0443 0.5246 0.4311 290 T 0.0581 0.1031 0.8388