# List of top-scoring protein chains for T0226.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1c7qA 445 1.39e-45 2pgi c.80.1.2 35307 1hm5A 558 3.00e-06 c.80.1.2 76717 1kojA 557 3.00e-06 c.80.1.2 72821 1n8tA 557 3.16e-06 c.80.1.2 85454 1jlhA 558 1.01e-05 c.80.1.2 77131 1iatA 557 1.07e-05 1dqrA c.80.1.2 62123 1jiqA 558 1.07e-05 c.80.1.2 71689 1gzdA 557 1.68e-05 c.80.1.2 70804 1kfiA 572 1.24e+00 c.84.1.1 68555 c.84.1.1 68556 c.84.1.1 68557 d.129.2.1 68558 1ltxR 650 1.75e+00 c.3.1.3 84715 d.16.1.6 84716 1vom 762 1.91e+00 1lvk b.34.3.1 24577 c.37.1.9 32174 1f4lA 551 1.96e+00 1qqtA a.27.1.1 59648 c.26.1.1 59649 g.41.1.1 59650 1pfvA 551 1.96e+00 a.27.1.1 -727 c.26.1.1 -6603 g.41.1.1 -12765 1qqtA 551 2.04e+00 1qqtA a.27.1.1 16923 c.26.1.1 31590 g.41.1.1 45175 1eziA 228 2.15e+00 1eyrA c.68.1.13 34512 1jx2A 776 2.17e+00 b.34.3.1 67402 c.37.1.9 67403 1ixrA 191 2.35e+00 a.60.2.1 76925 b.40.4.2 76926 1d0yA 761 2.38e+00 1lvk b.34.3.1 24581 c.37.1.9 32178 1fmvA 761 2.38e+00 1lvk b.34.3.1 24580 c.37.1.9 32177 1mma 762 2.40e+00 1lvk b.34.3.1 24587 c.37.1.9 32184 1jeoA 180 2.40e+00 c.80.1.3 66611 1mmn 762 2.44e+00 1lvk b.34.3.1 24582 c.37.1.9 32179 1lvk 762 2.59e+00 1lvk b.34.3.1 24576 c.37.1.9 32173 1mmg 762 2.64e+00 1lvk b.34.3.1 24579 c.37.1.9 32176 1sdwA 314 3.30e+00 b.121.1.2 -3024 b.121.1.2 -3025 1phm 310 3.50e+00 1phm b.121.1.2 59015 b.121.1.2 59016 1uhlA 236 3.90e+00 1g8xA 1010 3.92e+00 1lvk k.1.1.1 46378 1sxjE 354 3.99e+00 4uagA 437 4.65e+00 4uagA c.5.1.1 30651 c.59.1.1 33952 c.72.2.1 34955 1imjA 210 5.03e+00 c.69.1.23 71246 1m6jA 261 5.48e+00 c.1.1.1 78693 1vimA 200 5.63e+00 c.80.1.3 -8532 1b0uA 262 6.04e+00 1b0uA c.37.1.12 32370 1dofA 403 6.49e+00 1c3cA a.127.1.1 19429 1crzA 403 6.60e+00 1crzA b.68.4.1 27629 c.51.2.1 33211 1c5kA 439 7.02e+00 1crzA b.68.4.1 27630 c.51.2.1 33212 7odcA 424 7.19e+00 7odcA b.49.2.3 26488 c.1.6.1 28650 1gt7A 274 7.24e+00 c.74.1.1 70398 1riqA 465 7.65e+00 unknown_sccs -1295 d.104.1.1 -10769 1dhs 361 8.09e+00 1dhs c.31.1.1 31727 1poiB 260 8.86e+00 1poiB unknown_sccs 34155 1h9uA 224 9.16e+00 a.123.1.1 70923 1bg3A 918 9.41e+00 1qhaA c.55.1.3 33491 c.55.1.3 33492 c.55.1.3 33493 c.55.1.3 33494 1a12A 413 9.71e+00 1a12A b.69.5.1 27663 1qmrA 159 1.01e+01 1bv1 d.129.3.1 41314 1ehaA 558 1.06e+01 1ehaA b.1.18.2 21859 b.71.1.1 27786 c.1.8.1 28773 1i2mB 402 1.08e+01 1a12A b.69.5.1 61569 1fz1E 170 1.15e+01 1mtyG a.23.3.1 16500 1brwA 433 1.22e+01 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1e5xA 485 1.23e+01 c.79.1.1 59283 1mtyG 162 1.24e+01 1mtyG a.23.3.1 16498 1g2nA 264 1.32e+01 1lbd a.123.1.1 60227 1r1kA 263 1.33e+01 a.123.1.1 -1678 1qcrC 378 1.37e+01 1be3C f.32.1.1 75931 f.21.1.2 75932 1l0lC 379 1.37e+01 f.32.1.1 84486 f.21.1.2 84487 1hskA 326 1.37e+01 2mbr d.145.1.2 61241 d.146.1.1 61242 1iw7A 315 1.44e+01 d.74.3.1 71470 d.181.1.1 71471 1nrlA 316 1.53e+01 a.123.1.1 -1668 1o0sA 605 1.61e+01 c.2.1.7 86540 c.58.1.3 86541 1nwcA 371 1.71e+01 c.2.1.3 -5883 d.81.1.1 -10466 1onfA 500 1.76e+01 c.3.1.5 87141 c.3.1.5 87142 d.87.1.1 87143 1eh9A 558 1.79e+01 1ehaA b.1.18.2 21858 b.71.1.1 27785 c.1.8.1 28772 1naaA 541 1.79e+01 c.3.1.2 80365 d.16.1.1 80366 1pkhA 204 1.83e+01 b.85.4.1 -5053 1kdgA 546 1.83e+01 c.3.1.2 77337 d.16.1.1 77338 1qh8B 519 1.86e+01 1qguB c.92.2.3 35634 1uirA 314 1.87e+01 c.66.1.17 -8114 1v4vA 376 1.93e+01 c.87.1.3 -8583 1i7pA 274 1.93e+01 b.43.4.2 66048 c.25.1.1 66049 1pk0A 507 2.00e+01 e.41.1.1 -11979 1k8tA 510 2.02e+01 e.41.1.1 68316 1vhqA 232 2.04e+01 c.23.16.2 -6514 1htlA 191 2.06e+01 1lt3A d.166.1.1 42237 1ozaA 371 2.10e+01 1e0cA 271 2.11e+01 1e0cA c.46.1.2 32717 c.46.1.2 32718 2liv 344 2.15e+01 2liv c.93.1.1 35708 1fntD 254 2.23e+01 1pdvA 197 2.25e+01 c.23.16.2 88036 1p5fA 189 2.25e+01 c.23.16.2 -6508 1pe0A 197 2.30e+01 c.23.16.2 88045 1d3yA 301 2.34e+01 1d3yA e.12.1.1 43252 1fm4A 159 2.34e+01 1bv1 d.129.3.1 76186 1oy1A 228 2.37e+01 c.23.16.2 87548 1j42A 189 2.40e+01 c.23.16.2 -6513 1ojrA 274 2.42e+01 c.74.1.1 -8441 1o22A 170 2.46e+01 d.238.1.1 86557 1ih7A 903 2.46e+01 1clqA c.55.3.5 62375 e.8.1.1 62376 1erjA 393 2.53e+01 1erjA b.69.4.1 27660 1b6fA 159 2.62e+01 1bv1 d.129.3.1 41316 1dd9A 338 2.71e+01 1dd9A e.13.1.1 43254 1o7rA 289 2.79e+01 c.68.1.9 -8218 1c9bB 180 2.83e+01 1ytbA d.129.1.1 41216 d.129.1.1 41217 1nvpA 181 2.86e+01 d.129.1.1 -11002 d.129.1.1 -11003 1lp9E 194 2.87e+01 b.1.1.1 -2316 b.1.1.2 -2550 1jfiC 185 2.90e+01 1ytbA d.129.1.1 62938 d.129.1.1 62939 1tghA 185 2.92e+01 1ytbA d.129.1.1 41214 d.129.1.1 41215 1pzgA 331 2.95e+01 c.2.1.5 -5931 d.162.1.1 -11498 1cdwA 179 2.99e+01 1ytbA d.129.1.1 41212 d.129.1.1 41213 1ka9F 252 3.01e+01 c.1.2.1 77307 1g8oA 310 3.02e+01 1g8oA c.68.1.9 60375 1lltA 159 3.05e+01 d.129.3.1 -11033 1eqnA 321 3.09e+01 1dd9A e.13.1.1 43256 1m45A 148 3.16e+01 a.39.1.5 78598 1g0uC 243 3.18e+01 d.153.1.4 41948 1hmt 132 3.18e+01 1hmt b.60.1.2 27169 1rypD 241 3.19e+01 1rypD d.153.1.4 41935 1qm0A 143 3.24e+01 1b10A d.6.1.1 37317 1fkcA 142 3.24e+01 1b10A d.6.1.1 37319 1q9yA 906 3.25e+01 c.55.3.5 -7640 e.8.1.1 -11890 1o58A 303 3.28e+01 c.79.1.1 -8503 1h65A 270 3.30e+01 c.37.1.8 65640 1o89A 345 3.36e+01 b.35.1.2 -3703 c.2.1.1 -5727 1ig9A 903 3.39e+01 1clqA c.55.3.5 62367 e.8.1.1 62368 1b33A 160 3.41e+01 1qgwC a.1.1.3 15649 1o7qA 289 3.58e+01 c.68.1.9 -8216 1r4aA 165 3.60e+01 c.37.1.8 -7089 1iv8A 720 3.62e+01 b.71.1.1 76842 c.1.8.1 76843 1o7oA 289 3.64e+01 c.68.1.9 -8214 1lbqA 362 3.66e+01 c.92.1.1 77877 1uouA 474 3.66e+01 a.46.2.1 -951 c.27.1.1 -6642 d.41.3.1 -9715 1h99A 224 3.80e+01 a.142.1.1 60814 a.142.1.1 60815 1dciA 275 3.80e+01 1dciA c.14.1.3 30918 1gynA 358 3.84e+01 c.1.10.2 83385 2atcA 305 3.85e+01 3csuA c.78.1.1 35194 c.78.1.1 35195 1jbkA 195 3.87e+01 c.37.1.20 71631 1vkbA 161 3.91e+01