# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1c7qA 445 1.37e-33 2pgi c.80.1.2 35307 1iatA 557 3.24e-06 1dqrA c.80.1.2 62123 1moq 368 1.10e-01 1moq c.80.1.1 35302 1j5xA 342 2.03e-01 c.80.1.1 71591 1f0xA 571 5.47e-01 1f0xA d.58.32.2 39483 d.145.1.1 41746 1kay 381 8.72e-01 1ba1 c.55.1.1 33385 c.55.1.1 33386 1bupA 386 9.37e-01 1ba1 c.55.1.1 33377 c.55.1.1 33378 1vimA 200 9.45e-01 c.80.1.3 -8532 1o58A 303 9.67e-01 c.79.1.1 -8503 1gpmA 525 1.01e+00 1gpmA c.23.16.1 31405 c.26.2.1 31608 d.52.2.1 38826 1ab4 477 1.08e+00 1ab4 e.11.1.1 43251 1kaeA 434 2.90e+00 c.82.1.2 72247 1e8cA 498 3.98e+00 c.98.1.1 59377 c.59.1.1 59378 c.72.2.1 59379 1i7pA 274 4.16e+00 b.43.4.2 66048 c.25.1.1 66049 1k8tA 510 4.63e+00 e.41.1.1 68316 1kyqA 274 4.82e+00 c.2.1.11 73281 e.37.1.1 73282 1p5fA 189 5.15e+00 c.23.16.2 -6508 1n2zA 245 5.37e+00 c.92.2.2 79865 1jeoA 180 6.34e+00 c.80.1.3 66611 1ptvA 321 8.71e+00 1pty c.45.1.2 32665 1b0uA 262 8.77e+00 1b0uA c.37.1.12 32370 1rqpA 299 1.03e+01 unknown_sccs -4411 unknown_sccs -7908 2bce 581 1.07e+01 2bce c.69.1.1 34625 1bpoA 494 1.08e+01 1bpoA a.118.1.4 19143 b.69.6.1 27670 1iv8A 720 1.09e+01 b.71.1.1 76842 c.1.8.1 76843 1m6jA 261 1.14e+01 c.1.1.1 78693 1eziA 228 1.24e+01 1eyrA c.68.1.13 34512 1ur5A 309 1.28e+01 c.2.1.5 -5910 d.162.1.1 -11477 1h7sA 365 1.31e+01 d.14.1.3 65705 d.122.1.2 65706 1t35A 191 1.32e+01 unknown_sccs -7285 1qs1A 462 1.33e+01 1qs1A d.166.1.1 42260 d.166.1.1 42261 1sxjE 354 1.38e+01 1a8q 274 1.39e+01 1brt c.69.1.12 34702 1oe8A 211 1.51e+01 a.45.1.1 86905 c.47.1.5 86906 1vhqA 232 1.63e+01 c.23.16.2 -6514 1noyA 388 1.80e+01 1clqA c.55.3.5 33713 1jx2B 315 1.84e+01 c.37.1.8 67404 1qv9A 283 1.85e+01 unknown_sccs -6888 1mb4A 370 1.92e+01 c.2.1.3 78908 d.81.1.1 78909 2liv 344 2.14e+01 2liv c.93.1.1 35708 1mtzA 293 2.15e+01 c.69.1.7 79467 1p99A 295 2.16e+01 c.94.1.1 -8697 1knqA 175 2.16e+01 c.37.1.17 72786 1d3yA 301 2.37e+01 1d3yA e.12.1.1 43252 6ldh 330 2.37e+01 3ldh c.2.1.5 30161 d.162.1.1 42128 1e3jA 352 2.39e+01 1e3jA b.35.1.2 24765 c.2.1.1 29781 1p3dA 475 2.42e+01 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1qh8A 478 2.50e+01 1qguA c.92.2.3 35633 1a8l 226 2.60e+01 1a8l c.47.1.2 32777 c.47.1.2 32778 1kekA 1231 2.63e+01 c.36.1.8 68524 c.36.1.12 68525 c.48.1.3 68526 c.64.1.1 68527 d.58.1.5 68528 1r3eA 309 2.67e+01 b.122.1.1 -5118 unknown_sccs -10146 1t8hA 277 2.71e+01 1ni9A 338 2.71e+01 e.7.1.2 85739 1a12A 413 2.71e+01 1a12A b.69.5.1 27663 1pa1A 310 2.76e+01 c.45.1.2 -7332 1q7zA 566 2.76e+01 c.1.21.2 -5638 c.1.26.1 -5666 1pq4A 291 2.86e+01 c.92.2.2 -8633 1sf8A 126 2.99e+01 1inlA 296 3.02e+01 c.66.1.17 66220 1q8iA 783 3.04e+01 c.55.3.5 -7635 e.8.1.1 -11885 1n25A 368 3.18e+01 c.37.1.20 85264 1iw7C 1119 3.25e+01 e.29.1.1 71474 1ede 310 3.35e+01 1b6g c.69.1.8 34662 1lj8A 493 3.41e+01 a.100.1.9 78033 c.2.1.6 78034 1udxA 416 3.42e+01 b.117.1.1 -3546 c.37.1.8 -7101 unknown_sccs -9009 1q1gA 276 3.47e+01 c.56.2.1 -7846 4uagA 437 3.50e+01 4uagA c.5.1.1 30651 c.59.1.1 33952 c.72.2.1 34955 1b6g 310 3.53e+01 1b6g c.69.1.8 34661 1d2rA 326 3.79e+01 1d2rB c.26.1.1 31572 1ejxC 567 3.80e+01 b.92.1.1 83184 c.1.9.2 83185 1lwdA 413 3.81e+01 c.77.1.1 78265 1iq6A 134 3.83e+01 d.38.1.4 76755 1mnaA 298 3.86e+01 c.69.1.22 79322