# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1c7qA 445 1.75e-28 2pgi c.80.1.2 35307 1iatA 557 5.16e-07 1dqrA c.80.1.2 62123 1j5xA 342 6.81e-02 c.80.1.1 71591 1moq 368 1.12e-01 1moq c.80.1.1 35302 1vimA 200 1.38e-01 c.80.1.3 -8532 1kay 381 3.64e-01 1ba1 c.55.1.1 33385 c.55.1.1 33386 1bupA 386 3.96e-01 1ba1 c.55.1.1 33377 c.55.1.1 33378 1f0xA 571 9.82e-01 1f0xA d.58.32.2 39483 d.145.1.1 41746 1gpmA 525 1.05e+00 1gpmA c.23.16.1 31405 c.26.2.1 31608 d.52.2.1 38826 1k8tA 510 1.36e+00 e.41.1.1 68316 1o58A 303 1.46e+00 c.79.1.1 -8503 1mtzA 293 1.65e+00 c.69.1.7 79467 1kyqA 274 2.54e+00 c.2.1.11 73281 e.37.1.1 73282 1eziA 228 2.54e+00 1eyrA c.68.1.13 34512 1ptvA 321 2.98e+00 1pty c.45.1.2 32665 1jeoA 180 3.22e+00 c.80.1.3 66611 6ldh 330 3.96e+00 3ldh c.2.1.5 30161 d.162.1.1 42128 1t35A 191 3.99e+00 unknown_sccs -7285 1f0kA 364 4.37e+00 1f0kA c.87.1.2 35465 1sixA 174 4.97e+00 b.85.4.1 -5030 1m6jA 261 4.98e+00 c.1.1.1 78693 1iv8A 720 4.98e+00 b.71.1.1 76842 c.1.8.1 76843 1e8cA 498 5.60e+00 c.98.1.1 59377 c.59.1.1 59378 c.72.2.1 59379 1qv9A 283 5.87e+00 unknown_sccs -6888 1i7pA 274 6.09e+00 b.43.4.2 66048 c.25.1.1 66049 1jjvA 206 6.32e+00 c.37.1.1 71698 1kekA 1231 6.43e+00 c.36.1.8 68524 c.36.1.12 68525 c.48.1.3 68526 c.64.1.1 68527 d.58.1.5 68528 1ur5A 309 7.57e+00 c.2.1.5 -5910 d.162.1.1 -11477 1e79A 510 8.00e+00 1skyB a.69.1.1 18269 b.49.1.1 26434 c.37.1.11 32314 1mnaA 298 8.03e+00 c.69.1.22 79322 1rqpA 299 8.04e+00 unknown_sccs -4411 unknown_sccs -7908 1iz6A 138 9.10e+00 b.34.5.2 76976 b.40.4.5 76977 1pa1A 310 9.81e+00 c.45.1.2 -7332 1sxjE 354 1.00e+01 1q7zA 566 1.23e+01 c.1.21.2 -5638 c.1.26.1 -5666 1udxA 416 1.25e+01 b.117.1.1 -3546 c.37.1.8 -7101 unknown_sccs -9009 1dxeA 256 1.28e+01 1dxeA c.1.12.5 29310 1b0pA 1231 1.32e+01 c.36.1.8 31831 c.36.1.12 31832 c.48.1.3 33104 c.64.1.1 34157 d.58.1.5 39003 1qh8A 478 1.44e+01 1qguA c.92.2.3 35633 1p5sA 203 1.58e+01 a.40.1.1 -900 1mldA 314 1.65e+01 2cmd c.2.1.5 30122 d.162.1.1 42089 1q4gA 553 1.71e+01 a.93.1.2 -1248 g.3.11.1 -12492 1h7sA 365 1.90e+01 d.14.1.3 65705 d.122.1.2 65706 1p5fA 189 1.96e+01 c.23.16.2 -6508 1vjrA 271 2.10e+01 unknown_sccs -6853 1mk0A 97 2.22e+01 d.226.1.1 79216 1r3eA 309 2.23e+01 b.122.1.1 -5118 unknown_sccs -10146 1t8hA 277 2.23e+01 1j6rA 214 2.25e+01 d.173.1.2 71598 1nksA 194 2.26e+01 1nksA c.37.1.1 31886 1n2zA 245 2.35e+01 c.92.2.2 79865 1q1gA 276 2.43e+01 c.56.2.1 -7846 1lwdA 413 2.45e+01 c.77.1.1 78265 1mb4A 370 2.50e+01 c.2.1.3 78908 d.81.1.1 78909 1o63A 219 2.52e+01 c.94.1.1 -8691 1nal1 297 2.55e+01 1nal3 1ab4 477 2.55e+01 1ab4 e.11.1.1 43251 1ad2 228 2.58e+01 1ad2 e.24.1.1 43353 1h8eA 510 2.60e+01 1skyB a.69.1.1 60738 b.49.1.1 60739 c.37.1.11 60740 1o66A 275 2.67e+01 c.1.12.8 -5590 1a12A 413 2.69e+01 1a12A b.69.5.1 27663 1meoA 209 2.72e+01 c.65.1.1 79035 1pq4A 291 2.72e+01 c.92.2.2 -8633 1je0A 236 2.80e+01 c.56.2.1 66581 1m3sA 186 2.84e+01 c.80.1.3 78573 1knqA 175 2.85e+01 c.37.1.17 72786 1b0uA 262 2.90e+01 1b0uA c.37.1.12 32370 1kaeA 434 2.93e+01 c.82.1.2 72247 2pfkA 320 3.02e+01 3pfk c.89.1.1 35577 1bkb 136 3.12e+01 1bkb b.34.5.2 24609 b.40.4.5 25341 1hl2A 297 3.13e+01 c.1.10.1 83581 1jz8A 1023 3.15e+01 b.1.4.1 67830 b.1.4.1 67831 b.18.1.5 67832 b.30.5.1 67833 c.1.8.3 67834 4pfk 319 3.18e+01 3pfk c.89.1.1 35582 1sf8A 126 3.22e+01 1cliA 345 3.26e+01 1cliA d.79.4.1 39816 d.139.1.1 41459 1rqlA 267 3.42e+01 c.108.1.3 -6814 1d2mA 665 3.47e+01 1d2mA c.37.1.19 32417 c.37.1.19 32418 1uouA 474 3.48e+01 a.46.2.1 -951 c.27.1.1 -6642 d.41.3.1 -9715 1c4oA 664 3.49e+01 1d2mA c.37.1.19 32415 c.37.1.19 32416 1f52A 468 3.83e+01 1lgr d.15.9.1 37839 d.128.1.1 41169 2eifA 136 3.84e+01 1bkb b.34.5.2 24607 b.40.4.5 25339 1pgvA 197 3.89e+01 c.10.1.1 88073 1cydA 244 3.98e+01 1cydA c.2.1.2 29825