# List of top-scoring protein chains for T0226.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1tzbA	302	5.14e-05			
1fnnA	389	5.78e-01	1fnnA	a.4.5.11	16129
				c.37.1.20	32426
1b6sA	355	2.62e+00	1b6rA	b.84.2.1	28242
				c.30.1.1	31649
				d.142.1.2	41494
1b6rA	355	2.65e+00	1b6rA	b.84.2.1	28241
				c.30.1.1	31648
				d.142.1.2	41493
1rp3A	239	1.13e+01		a.4.13.1	-326
				a.4.13.2	-334
				a.177.1.1	-1490
1umwA	237	1.33e+01		unknown_sccs	-9455
				unknown_sccs	-9456
1c30B	382	1.41e+01		c.8.3.1	30736
				c.23.16.1	31413
1keeB	382	1.45e+01		c.8.3.1	68498
				c.23.16.1	68499
1h09A	338	1.51e+01		b.109.1.1	83420
				c.1.8.8	83421
1cs0B	382	1.53e+01	1c3oB	c.8.3.1	30740
				c.23.16.1	31417
7ceiB	206	1.54e+01	1bxiB	d.4.1.1	37134
1obaA	339	1.55e+01		b.109.1.1	-5009
				c.1.8.8	-5404
1hrnA	337	1.60e+01	1smrA	b.50.1.2	26869
1rne	340	1.60e+01	1smrA	b.50.1.2	26871
1q4kA	259	1.62e+01		unknown_sccs	-9459
				unknown_sccs	-9460
1j32A	388	1.73e+01		c.67.1.1	77067
1fezA	256	1.73e+01	1fezA	c.108.1.3	43343
1rqlA	267	1.78e+01		c.108.1.3	-6814
1m6vB	382	1.89e+01		c.8.3.1	74542
				c.23.16.1	74543
1jdbC	382	1.89e+01		c.8.3.1	30756
				c.23.16.1	31433
1a9xB	379	1.90e+01	1c3oB	c.8.3.1	30732
				c.23.16.1	31409
1b33A	160	1.97e+01	1qgwC	a.1.1.3	15649
1rz1A	161	2.02e+01		b.45.1.2	-4088
1tljA	213	2.04e+01			
1k8kC	372	2.09e+01		b.69.4.1	68308
1gz3A	554	2.21e+01		c.2.1.7	83393
				c.58.1.3	83394
1gz4A	551	2.34e+01		c.2.1.7	70794
				c.58.1.3	70795
1pj3A	564	2.36e+01		c.2.1.7	-5974
				c.58.1.3	-6380
1qr6A	584	2.41e+01	1qr6A	c.2.1.7	30293
				c.58.1.3	33941
2msbA	115	2.70e+01	1rtm1	d.169.1.1	42355
1b8eA	162	2.92e+01	1bebA	b.60.1.1	59077
1iu8A	206	3.03e+01		c.56.4.1	71436
1bebA	162	3.13e+01	1bebA	b.60.1.1	27115
1q3qA	548	3.19e+01		a.129.1.2	-1864
				c.8.5.2	-6164
				d.56.1.2	-9909
1q3sA	548	3.20e+01		a.129.1.2	-1872
				c.8.5.2	-6172
				d.56.1.2	-9917
1q3rA	548	3.23e+01		a.129.1.2	-1868
				c.8.5.2	-6168
				d.56.1.2	-9913
1i6vD	1264	3.23e+01		e.29.1.2	61857
1vhh	162	3.25e+01	1vhh	d.65.1.2	39550
1oc2A	348	3.28e+01		c.2.1.2	-5753
1i5eA	209	3.36e+01		c.61.1.1	71116
1fifA	154	3.36e+01	1rtm1	d.169.1.1	42373
				h.1.1.1	45389
1hqmD	1265	3.38e+01		i.8.1.1	45975
1zap	342	3.44e+01	1eagA	b.50.1.2	26827
1m1fA	110	3.44e+01		b.34.6.2	78401
1bcj1	154	3.48e+01	1rtm1		
1rwyA	109	3.58e+01		a.39.1.4	-825
1eljA	381	3.71e+01	4mbp	c.94.1.1	35791
1afb1	154	3.80e+01	1rtm1		
1mtyG	162	3.91e+01	1mtyG	a.23.3.1	16498
1bch1	154	4.00e+01	1rtm1