# List of top-scoring protein chains for T0226.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tzbA 302 4.50e-05 1q4kA 259 1.04e+00 unknown_sccs -9459 unknown_sccs -9460 1oe8A 211 1.33e+00 a.45.1.1 86905 c.47.1.5 86906 1umwA 237 1.36e+00 unknown_sccs -9455 unknown_sccs -9456 1hxpA 348 2.30e+00 1guqA d.13.1.2 37530 d.13.1.2 37531 1qppA 218 2.86e+00 1qpxA b.1.11.1 22320 b.7.2.1 23202 3dpa 218 2.88e+00 1qpxA b.1.11.1 22323 b.7.2.1 23205 1pdkA 218 2.92e+00 1qpxA b.1.11.1 22322 b.7.2.1 23204 1n0lA 224 2.96e+00 b.1.11.1 79744 b.7.2.1 79745 1hxqA 348 3.39e+00 1guqA d.13.1.2 37542 d.13.1.2 37543 1hxqB 348 3.40e+00 1guqA d.13.1.2 37544 d.13.1.2 37545 1qpxA 218 4.55e+00 1qpxA b.1.11.1 22318 b.7.2.1 23200 1exsA 160 5.67e+00 1bebA b.60.1.1 27125 1b9bA 255 5.93e+00 1amk c.1.1.1 28531 1tljA 213 6.60e+00 1a3c 181 6.71e+00 1a3c c.61.1.1 34095 1io8A 368 7.34e+00 1f4tA a.104.1.1 62618 1io7A 368 7.38e+00 1f4tA a.104.1.1 18971 1guqA 348 7.62e+00 1guqA d.13.1.2 37522 d.13.1.2 37523 1b6rA 355 8.07e+00 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 1b6sA 355 8.35e+00 1b6rA b.84.2.1 28242 c.30.1.1 31649 d.142.1.2 41494 1hk5A 585 8.49e+00 a.126.1.1 83536 a.126.1.1 83537 a.126.1.1 83538 2btmA 252 8.51e+00 1amk c.1.1.1 28511 1bke 581 8.53e+00 1bj5 a.126.1.1 19387 a.126.1.1 19388 a.126.1.1 19389 1n5uA 585 8.55e+00 a.126.1.1 85339 a.126.1.1 85340 a.126.1.1 85341 1hk3A 585 8.77e+00 a.126.1.1 83530 a.126.1.1 83531 a.126.1.1 83532 1btmA 252 9.88e+00 1amk c.1.1.1 28513 1ej6A 1289 1.21e+01 i.7.1.1 45967 1ufrA 181 1.26e+01 c.61.1.1 -7949 1i94H 138 1.29e+01 1seiA d.140.1.1 61999 1p85B 209 1.39e+01 i.1.1.1 87871 1an7A 136 1.54e+01 1seiA d.140.1.1 41465 1fjgH 138 1.56e+01 1seiA d.140.1.1 41468 1c3d 294 1.65e+01 1c3d a.102.4.4 18874 1ghqA 308 1.68e+01 1c3d a.102.4.4 60521 1smrA 335 1.72e+01 1smrA b.50.1.2 26878 1r49A 592 1.80e+01 a.2.8.1 -106 d.163.1.2 -11536 e.15.1.1 -11994 1k4tA 592 1.81e+01 a.2.8.1 77263 d.163.1.2 77264 e.15.1.1 77265 1dgi1 288 1.83e+01 1a31A 591 1.86e+01 1a36A d.163.1.2 42170 e.15.1.1 43263 1a35A 591 1.86e+01 1a36A d.163.1.2 42171 e.15.1.1 43264 1o4uA 285 1.94e+01 c.1.17.1 86624 d.41.2.1 86625 1r71A 178 2.16e+01 1hxs1 302 2.17e+01 1vh1A 256 2.18e+01 c.68.1.13 -8244 1b33A 160 2.28e+01 1qgwC a.1.1.3 15649 1k0rA 366 2.35e+01 b.40.4.5 67961 d.52.3.1 67962 d.52.3.1 67963 d.202.1.1 67964 1mtyG 162 2.36e+01 1mtyG a.23.3.1 16498 1jk7A 323 2.39e+01 1auiA d.159.1.3 63144 1lk5A 229 2.51e+01 unknown_sccs 73960 d.58.40.1 73961 1dwuA 213 2.52e+01 1cjsA e.24.1.1 43355 1k96A 90 2.60e+01 a.39.1.2 72187 1q1oA 98 2.60e+01 d.15.2.2 -9172 1k8uA 90 2.61e+01 a.39.1.2 72181 1qqfA 277 2.64e+01 1c3d a.102.4.4 18875 1pqsA 77 2.70e+01 d.15.2.2 88277 1ur1A 378 2.73e+01 c.1.8.3 -5311 1c9eA 306 2.75e+01 1ak1 c.92.1.1 35595 1ar71 302 2.75e+01 1pov1 1dozA 309 2.76e+01 1ak1 c.92.1.1 35592 1c1hA 310 2.76e+01 1ak1 c.92.1.1 35593 1pov1 302 2.77e+01 1pov1 1fz1E 170 2.85e+01 1mtyG a.23.3.1 16500 1oc2A 348 2.97e+01 c.2.1.2 -5753 1jmjA 480 3.08e+01 e.1.1.1 77135 1i5eA 209 3.14e+01 c.61.1.1 71116 1h6hA 143 3.15e+01 d.189.1.1 65681 1fjmA 330 3.17e+01 1auiA d.159.1.3 42082 1rz1A 161 3.40e+01 b.45.1.2 -4088 1fnnA 389 3.75e+01 1fnnA a.4.5.11 16129 c.37.1.20 32426 1k2hA 93 3.77e+01 a.39.1.2 68056 1dusA 194 3.92e+01 1dusA c.66.1.4 34182 1ar61 302 3.96e+01 1pov1