# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1tzbA	302	8.98e-06			
1eqfA	280	8.12e-01	1eqfA	a.29.2.1	16972
				a.29.2.1	16973
1moq	368	1.25e+00	1moq	c.80.1.1	35302
2kinB	100	1.59e+00	3kinB		
1sesA	421	2.44e+00	1sesA	a.2.7.1	15710
				d.104.1.1	40710
1kkhA	317	3.05e+00		d.14.1.5	72645
				d.58.26.3	72646
1c7qA	445	3.28e+00	2pgi	c.80.1.2	35307
1e3aB	560	4.68e+00	1ajqB		
1no1A	126	5.68e+00		a.179.1.1	85913
1gk9B	557	6.39e+00			
1mkaA	171	6.66e+00	1mkaA	d.38.1.2	38543
1m3sA	186	6.89e+00		c.80.1.3	78573
1vimA	200	7.34e+00		c.80.1.3	-8532
1gp6A	356	7.69e+00		b.82.2.1	65441
1otgA	125	8.14e+00	1otgA	d.80.1.2	39831
1ct9A	553	8.60e+00	1ct9A	c.26.2.1	31616
				d.153.1.1	41834
1okcA	297	8.90e+00		unknown_sccs	-12339
1q1oA	98	9.72e+00		d.15.2.2	-9172
1t35A	191	1.00e+01		unknown_sccs	-7285
1j5xA	342	1.02e+01		c.80.1.1	71591
1teaA	299	1.03e+01			
1lucA	355	1.07e+01	1lucA	c.1.16.1	29547
1h0hA	977	1.09e+01		b.52.2.2	76435
				c.81.1.1	76436
1ru3A	732	1.14e+01		e.26.1.3	-12021
1oaoC	729	1.19e+01		e.26.1.3	86746
1ckeA	227	1.27e+01	1ckeA	c.37.1.1	31846
1e3dB	542	1.29e+01	1h2rL	e.18.1.1	59189
1jayA	212	1.33e+01		c.2.1.6	66478
1o22A	170	1.44e+01		d.238.1.1	86557
1o75A	415	1.67e+01		b.1.20.1	81117
				b.1.20.1	81118
				b.120.1.1	81119
1efdN	266	1.77e+01	1efdN	c.92.2.1	35597
1orvA	728	1.79e+01		b.70.3.1	87354
				c.69.1.24	87355
1p7tA	731	1.89e+01		c.1.13.1	-5600
1dozA	309	2.08e+01	1ak1	c.92.1.1	35592
1n1cA	217	2.08e+01		a.184.1.1	85254
1d8cA	723	2.13e+01	1d8cA	c.1.13.1	29325
1or0B	528	2.22e+01			
1m6jA	261	2.27e+01		c.1.1.1	78693
2tmnE	316	2.41e+01	1hyt	d.92.1.2	59055
1vhh	162	2.49e+01	1vhh	d.65.1.2	39550
1oruA	195	2.71e+01		unknown_sccs	-4390
1fpoA	171	2.88e+01	1fpoA	a.2.3.1	15693
				a.23.1.1	16487
1umgA	362	3.06e+01			
1lfwA	470	3.27e+01		c.56.5.4	77942
				d.58.19.1	77943
1v54C	261	3.30e+01		f.25.1.1	-12239
1n8nA	212	3.70e+01		unknown_sccs	-6830
2occC	261	3.74e+01	1ocrC	f.25.1.1	43520
1jgjA	217	3.76e+01	1c3wA	f.13.1.1	62952
1ubkL	534	3.78e+01		e.18.1.1	88422