# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tzbA 302 3.28e-06 1moq 368 3.13e-01 1moq c.80.1.1 35302 1r2rA 248 7.77e-01 c.1.1.1 -5147 2kinB 100 8.51e-01 3kinB 1mkaA 171 1.10e+00 1mkaA d.38.1.2 38543 1uw4B 248 1.95e+00 unknown_sccs -1560 1teaA 299 2.11e+00 1g0hA 252 2.45e+00 1dk4A e.7.1.1 60171 1e1oA 504 2.47e+00 1lylA b.40.4.1 25258 d.104.1.1 40714 1m6jA 261 2.49e+00 c.1.1.1 78693 1sesA 421 2.53e+00 1sesA a.2.7.1 15710 d.104.1.1 40710 1mo0A 275 2.60e+00 c.1.1.1 79329 1igwA 434 2.62e+00 c.1.12.7 62370 1nnlA 225 2.64e+00 c.108.1.4 85906 2fcr 173 2.82e+00 1rcf c.23.5.1 31151 1t35A 191 2.89e+00 unknown_sccs -7285 1npyA 271 2.90e+00 c.2.1.7 85995 c.58.1.5 85996 1kb9B 352 3.81e+00 d.185.1.1 77313 d.185.1.1 77314 1o75A 415 3.93e+00 b.1.20.1 81117 b.1.20.1 81118 b.120.1.1 81119 1ezvB 352 4.16e+00 1ezvB d.185.1.1 59543 d.185.1.1 59544 1c7qA 445 4.45e+00 2pgi c.80.1.2 35307 1m3sA 186 5.11e+00 c.80.1.3 78573 1h2sA 225 5.24e+00 f.13.1.1 76578 1l2tA 235 5.29e+00 c.37.1.12 73514 1jgjA 217 5.89e+00 1c3wA f.13.1.1 62952 1garA 212 6.32e+00 2gar c.65.1.1 34162 1qwoA 442 6.39e+00 1amk 251 6.44e+00 1amk c.1.1.1 28503 1tpfA 250 6.50e+00 1amk c.1.1.1 28467 1lylA 504 6.69e+00 1lylA b.40.4.1 25261 d.104.1.1 40717 1kv5A 250 6.75e+00 c.1.1.1 73052 1e3dB 542 6.81e+00 1h2rL e.18.1.1 59189 1rqlA 267 7.32e+00 c.108.1.3 -6814 1no1A 126 7.52e+00 a.179.1.1 85913 1st9A 143 7.84e+00 c.47.1.10 -7503 1guqA 348 8.70e+00 1guqA d.13.1.2 37522 d.13.1.2 37523 1tph1 247 8.98e+00 1amk 1kkhA 317 9.32e+00 d.14.1.5 72645 d.58.26.3 72646 1neyA 247 9.54e+00 c.1.1.1 80449 1i45A 248 9.59e+00 1amk c.1.1.1 61665 1bbhA 131 1.07e+01 1bbhA a.24.3.2 16546 1kid 203 1.07e+01 1derA c.8.5.1 30771 1umgA 362 1.16e+01 1n55A 251 1.18e+01 c.1.1.1 80007 1ixkA 315 1.19e+01 unknown_sccs -8099 1n8nA 212 1.26e+01 unknown_sccs -6830 1tljA 213 1.27e+01 1qopA 268 1.30e+01 2tysA c.1.2.4 28570 1fezA 256 1.31e+01 1fezA c.108.1.3 43343 1ftrA 296 1.33e+01 1ftrA d.58.33.1 39485 d.58.33.1 39486 1pszA 303 1.37e+01 1toaA c.92.2.2 35600 1kngA 156 1.40e+01 c.47.1.10 72777 1h6hA 143 1.40e+01 d.189.1.1 65681 2tysA 268 1.41e+01 2tysA c.1.2.4 28572 1uj6A 227 1.42e+01 1jlnA 297 1.45e+01 1pty c.45.1.2 63172 1byrA 155 1.46e+01 1byrA d.136.1.1 41450 1umwA 237 1.53e+01 unknown_sccs -9455 unknown_sccs -9456 1jkmB 361 1.56e+01 1jkmA c.69.1.2 34634 1lwbA 122 1.68e+01 a.133.1.3 84728 1okcA 297 1.74e+01 unknown_sccs -12339 1ru3A 732 1.75e+01 e.26.1.3 -12021 1fwxA 595 1.83e+01 b.6.1.4 60069 b.69.3.1 60070 1senA 164 1.91e+01 1eudA 311 1.96e+01 2scuA c.2.1.8 30312 c.23.4.1 31140 1jayA 212 1.98e+01 c.2.1.6 66478 1j6wA 175 1.99e+01 1j98A d.185.1.2 62663 1ep3A 311 2.00e+01 2dorA c.1.4.1 28597 1dqnA 230 2.01e+01 1dqnA c.61.1.1 34067 1lfwA 470 2.03e+01 c.56.5.4 77942 d.58.19.1 77943 1f6dA 376 2.05e+01 1f6dA c.87.1.3 35467 1qmhA 347 2.11e+01 1qmhA c.47.2.1 33082 d.68.2.1 39568 1m7yA 435 2.14e+01 c.67.1.4 78761 1ekeA 230 2.16e+01 1ekeA c.55.3.1 33572 1jztA 246 2.18e+01 c.104.1.1 63319 1grj 158 2.23e+01 1grj a.2.1.1 15691 d.26.1.2 38433 7aatA 401 2.23e+01 1ajsA c.67.1.1 34250 1i2aA 219 2.29e+01 e.24.1.1 -12012 1mqvA 125 2.35e+01 a.24.3.2 79415 1bx4A 345 2.40e+01 1bx4A c.72.1.1 34935 1dqpA 230 2.45e+01 1dqnA c.61.1.1 34069 1h2rL 534 2.55e+01 1h2rL e.18.1.1 43298 1ignA 246 2.55e+01 1ignA a.4.1.6 16048 a.4.1.6 16049 1lyxA 248 2.60e+01 c.1.1.1 78304 1f0kA 364 2.60e+01 1f0kA c.87.1.2 35465 1mkyA 439 2.66e+01 c.37.1.8 79250 c.37.1.8 79251 d.52.5.1 79252 1vf6C 72 2.67e+01 unknown_sccs -1180 1eqfA 280 2.70e+01 1eqfA a.29.2.1 16972 a.29.2.1 16973 1fts 295 2.73e+01 1ng1 a.24.13.1 16968 c.37.1.10 32279 1e7aA 585 2.80e+01 1bj5 a.126.1.1 19360 a.126.1.1 19361 a.126.1.1 19362 1otgA 125 2.81e+01 1otgA d.80.1.2 39831 1ubkL 534 2.83e+01 e.18.1.1 88422 1b0uA 262 2.92e+01 1b0uA c.37.1.12 32370 1lucB 324 2.95e+01 1lucA c.1.16.1 29548 1q1oA 98 2.96e+01 d.15.2.2 -9172 5nul 138 2.99e+01 5nul c.23.5.1 31191 1bzyA 217 3.05e+01 1qk3A c.61.1.1 34071 1r5qA 102 3.09e+01 unknown_sccs -965 1i1qB 192 3.11e+01 1qdlB c.23.16.1 61544 1ekqA 272 3.13e+01 1c3qA c.72.1.2 34941 1oaoC 729 3.13e+01 e.26.1.3 86746 1ckv 141 3.21e+01 1ckv d.137.1.1 41452 2occC 261 3.28e+01 1ocrC f.25.1.1 43520 1l3iA 192 3.32e+01 c.66.1.22 77676 1az9 457 3.36e+01 1az9 c.55.2.1 33547 d.127.1.1 41164 1o5xA 248 3.38e+01 c.1.1.1 -5157 1josA 128 3.39e+01 d.52.7.1 84191 1lucA 355 3.44e+01 1lucA c.1.16.1 29547 1v54C 261 3.52e+01 f.25.1.1 -12239 1ip9A 85 3.53e+01 1ip9A d.15.2.2 62638 1k77A 260 3.58e+01 c.1.15.5 72096 1iu8A 206 3.67e+01 c.56.4.1 71436 1pmy 123 3.68e+01 1bqk b.6.1.1 22888 8tlnE 316 3.76e+01 1hyt d.92.1.2 59075 1j3vA 289 3.79e+01 a.100.1.1 -1303 c.2.1.6 -5947 1m4lA 307 3.82e+01 c.56.5.1 78604 1a3c 181 3.88e+01 1a3c c.61.1.1 34095 1rkuA 206 3.89e+01 unknown_sccs -6823 1gp6A 356 3.91e+01 b.82.2.1 65441