# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tzbA 302 7.08e-06 1guqA 348 4.49e-01 1guqA d.13.1.2 37522 d.13.1.2 37523 1n5uA 585 4.92e-01 a.126.1.1 85339 a.126.1.1 85340 a.126.1.1 85341 1tljA 213 5.45e-01 1e7aA 585 9.64e-01 1bj5 a.126.1.1 19360 a.126.1.1 19361 a.126.1.1 19362 1io7A 368 1.39e+00 1f4tA a.104.1.1 18971 1ohuA 175 1.48e+00 f.1.4.1 -12058 1k8uA 90 2.22e+00 a.39.1.2 72181 1oe8A 211 2.82e+00 a.45.1.1 86905 c.47.1.5 86906 1i2aA 219 3.99e+00 e.24.1.1 -12012 1c7qA 445 5.44e+00 2pgi c.80.1.2 35307 1shuX 182 5.74e+00 c.62.1.1 -7982 1fnnA 389 6.29e+00 1fnnA a.4.5.11 16129 c.37.1.20 32426 1i3dA 146 6.64e+00 a.1.1.2 61587 1fb6A 105 7.16e+00 1thx c.47.1.1 32739 1kb9B 352 8.07e+00 d.185.1.1 77313 d.185.1.1 77314 1tc5A 194 8.11e+00 1dozA 309 8.17e+00 1ak1 c.92.1.1 35592 1ezvB 352 9.01e+00 1ezvB d.185.1.1 59543 d.185.1.1 59544 1t7pA 698 9.35e+00 1t7pA c.55.3.5 33712 e.8.1.1 43005 1umwA 237 9.62e+00 unknown_sccs -9455 unknown_sccs -9456 1dusA 194 1.01e+01 1dusA c.66.1.4 34182 1oboA 169 1.28e+01 c.23.5.1 86776 1qqfA 277 1.37e+01 1c3d a.102.4.4 18875 1e3mA 800 1.54e+01 1ewqA a.113.1.1 19075 c.37.1.12 32389 c.55.6.1 33746 d.75.2.1 39747 1k4nA 192 1.56e+01 d.32.1.5 72059 1t06A 235 1.64e+01 1jipA 403 1.71e+01 a.104.1.1 66748 1b78A 193 1.78e+01 1b78A c.51.4.1 33221 1vf6C 72 1.91e+01 unknown_sccs -1180 1rcf 169 1.95e+01 1rcf c.23.5.1 31170 1wmuB 146 1.98e+01 1r2rA 248 2.02e+01 c.1.1.1 -5147 1o75A 415 2.02e+01 b.1.20.1 81117 b.1.20.1 81118 b.120.1.1 81119 1fsz 372 2.16e+01 1fsz c.32.1.1 31750 d.79.2.1 39802 1fseA 74 2.17e+01 1fseA a.4.6.2 60000 1cznA 169 2.21e+01 1rcf c.23.5.1 31181 1ckv 141 2.22e+01 1ckv d.137.1.1 41452 1it2A 146 2.22e+01 a.1.1.2 66365 1eudB 396 2.24e+01 2scuB c.23.4.1 31150 d.142.1.4 41571 1kkhA 317 2.27e+01 d.14.1.5 72645 d.58.26.3 72646 1btkA 169 2.32e+01 1btkA b.55.1.1 26959 1lwbA 122 2.36e+01 a.133.1.3 84728 1iqrA 420 2.38e+01 a.99.1.1 66275 c.28.1.1 66276 1vhh 162 2.38e+01 1vhh d.65.1.2 39550 1fazA 122 2.41e+01 1fazA a.133.1.3 59757 2fcr 173 2.55e+01 1rcf c.23.5.1 31151 1spgB 147 2.59e+01 1cg5B a.1.1.2 15588 7aatA 401 2.68e+01 1ajsA c.67.1.1 34250 5csmA 256 3.13e+01 5csmA a.130.1.2 19494 1smrA 335 3.13e+01 1smrA b.50.1.2 26878 1gpqA 135 3.32e+01 d.233.1.1 83295 1q5qA 259 3.40e+01 d.153.1.4 -11433 1jdw 423 3.43e+01 1jdw d.126.1.2 41129 1jkxA 212 3.52e+01 c.65.1.1 66813 1fw1A 216 3.85e+01 a.45.1.1 60051 c.47.1.5 60052