# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1tzbA	302	2.56e-07			
1io7A	368	7.56e-03	1f4tA	a.104.1.1	18971
1tljA	213	5.46e-01			
1c7qA	445	1.31e+00	2pgi	c.80.1.2	35307
1e3mA	800	1.52e+00	1ewqA	a.113.1.1	19075
				c.37.1.12	32389
				c.55.6.1	33746
				d.75.2.1	39747
1nu7D	282	2.63e+00		unknown_sccs	-433
				unknown_sccs	-434
1bif	469	2.82e+00	1bif	c.37.1.7	31961
				c.60.1.4	34003
1ohuA	175	2.88e+00		f.1.4.1	-12058
1dusA	194	3.20e+00	1dusA	c.66.1.4	34182
1e7aA	585	5.00e+00	1bj5	a.126.1.1	19360
				a.126.1.1	19361
				a.126.1.1	19362
1vhh	162	5.63e+00	1vhh	d.65.1.2	39550
1sxrA	183	6.81e+00			
1oboA	169	7.81e+00		c.23.5.1	86776
1n5uA	585	7.95e+00		a.126.1.1	85339
				a.126.1.1	85340
				a.126.1.1	85341
1h9dA	134	8.77e+00	1cmoA	b.2.5.6	60821
1rcf	169	9.93e+00	1rcf	c.23.5.1	31170
1jkxA	212	1.09e+01		c.65.1.1	66813
1ckv	141	1.12e+01	1ckv	d.137.1.1	41452
1gnd	447	1.15e+01	1gnd	c.3.1.3	30423
				d.16.1.6	37987
1m6eX	359	1.19e+01		unknown_sccs	-8071
1shuX	182	1.24e+01		c.62.1.1	-7982
1ezvB	352	1.28e+01	1ezvB	d.185.1.1	59543
				d.185.1.1	59544
1pswA	348	1.41e+01		c.87.1.7	88287
1cznA	169	1.44e+01	1rcf	c.23.5.1	31181
1moq	368	1.45e+01	1moq	c.80.1.1	35302
1m7yA	435	1.61e+01		c.67.1.4	78761
1nb8A	353	1.65e+01		d.3.1.9	80385
1o4uA	285	1.67e+01		c.1.17.1	86624
				d.41.2.1	86625
1rybA	212	1.67e+01		c.56.3.1	-7858
1qwlA	505	1.79e+01		e.5.1.1	-11823
1b8gA	429	1.79e+01	1b8gA	c.67.1.4	34499
1dozA	309	1.84e+01	1ak1	c.92.1.1	35592
1guqA	348	1.86e+01	1guqA	d.13.1.2	37522
				d.13.1.2	37523
1oe8A	211	2.06e+01		a.45.1.1	86905
				c.47.1.5	86906
1mkaA	171	2.09e+01	1mkaA	d.38.1.2	38543
1kb9B	352	2.11e+01		d.185.1.1	77313
				d.185.1.1	77314
1d5tA	433	2.12e+01	1gnd	c.3.1.3	30422
				d.16.1.6	37986
1eaqA	140	2.14e+01		b.2.5.6	76144
1tc5A	194	2.15e+01			
1ll8A	114	2.28e+01		d.110.3.5	78089
1ornA	226	2.47e+01		a.96.1.1	87342
1iv8A	720	2.62e+01		b.71.1.1	76842
				c.1.8.1	76843
1jipA	403	2.73e+01		a.104.1.1	66748
1mk4A	157	2.88e+01		d.108.1.1	84979
1smrA	335	2.99e+01	1smrA	b.50.1.2	26878
1b78A	193	3.18e+01	1b78A	c.51.4.1	33221
1vhyA	257	3.40e+01		b.122.1.2	-5129
				c.116.1.5	-6705
1r85A	379	3.45e+01			
1fazA	122	3.46e+01	1fazA	a.133.1.3	59757
1o75A	415	3.46e+01		b.1.20.1	81117
				b.1.20.1	81118
				b.120.1.1	81119
1vkbA	161	3.56e+01			
1m3iA	471	3.66e+01		f.9.1.1	-12374
1t06A	235	3.75e+01			
1lwbA	122	3.83e+01		a.133.1.3	84728
1ikoP	178	3.93e+01		b.6.1.5	71243