a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0226 [1-122] TTHB84orF1199200, T. thermophilus
- gi|46199283|ref|YP_004950.1|_1:122 hypothetical protein TTC0981 [Thermus thermophilus HB27]
- gi|46196908|gb|AAS81323.1| hypothetical protein TTC0981 [Thermus thermophilus HB27]

              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MRDLDREETYLVDRTGLALELRDLVGTGPVPGEAYPGPHAALGYGEGQFAALLSGLPDWGEEGTL
   2 MRDLDREETYLVDRTGLALELRDLVGTGPVPGEAYPGPHAALGYGEGQFAALLSGLPDWGEEGTL


         70        80        90       100       110       120      
         |         |         |         |         |         |      
   1 FLLEGGYDLGEAAGMALLAETGRARVVRVGFRPGVEVHIPPSPLAPYRYLRFLLLAT....
   2 FLLEGGYDLGEAAGMALLAETGRARVVRVGFRPGVEVHIPPSPLAPYRYLRFLLLATgre.