# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wkt 88 1.47e+00 1wkt b.11.1.2 23630 1q3oA 109 2.12e+00 b.36.1.1 -3776 1j27A 102 2.93e+00 unknown_sccs -10116 1iab 200 2.93e+00 1iae d.92.1.8 40312 1j58A 385 3.32e+00 b.82.1.2 71531 1umuA 116 3.35e+00 1umuA b.87.1.1 28382 1g6gA 127 3.52e+00 1g6gA b.26.1.2 23916 1agi 125 3.54e+00 7rsa d.5.1.1 37303 1ny6A 267 3.56e+00 c.37.1.20 -7221 1k32A 1045 4.16e+00 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 1xvaA 292 4.31e+00 1xvaA c.66.1.5 34183 1fvgA 199 4.58e+00 1fvaA d.58.28.1 39408 2aaiB 262 5.59e+00 1abrB b.42.2.1 25561 b.42.2.1 25562 1iae 200 5.82e+00 1iae d.92.1.8 40311 1bqsA 209 5.84e+00 1bqsA b.1.1.4 21704 b.1.1.4 21705 1qxrA 189 6.61e+00 b.82.1.7 -4834 2hrvA 142 6.79e+00 2hrvA b.47.1.4 26429 1m4jA 142 8.10e+00 d.109.1.2 78602 1nv8A 284 9.14e+00 c.66.1.30 86224 1plzA 189 9.58e+00 b.82.1.7 88160 1sxjE 354 9.74e+00 1f39A 101 9.96e+00 1umuA b.87.1.1 28386 8rucI 123 1.03e+01 1rboC d.73.1.1 39629 1olrA 224 1.10e+01 b.29.1.11 -3489 1gnuA 117 1.13e+01 d.15.1.3 65403 1s72M 194 1.13e+01 1sr8A 298 1.16e+01 1vddA 228 1.18e+01 1o5uA 101 1.22e+01 b.82.1.8 -4845 4pfk 319 1.22e+01 3pfk c.89.1.1 35582 1jj2L 194 1.28e+01 1ffkI d.12.1.2 63097 1m93B 245 1.34e+01 1ek8A 185 1.43e+01 1ek8A d.67.3.1 59444 1b5fA 239 1.48e+01 1smrA b.50.1.2 26836 1danH 254 1.48e+01 5ptp b.47.1.2 26292 1p3dA 475 1.51e+01 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1obbA 480 1.51e+01 c.2.1.5 86760 d.162.1.2 86761 1gk8I 140 1.55e+01 d.73.1.1 65242 1vavA 222 1.61e+01 1kmvA 186 1.69e+01 c.71.1.1 72757 1kliH 254 1.73e+01 b.47.1.2 77435 1vhzA 198 1.75e+01 d.113.1.1 -10897 1bjnA 360 1.77e+01 1bjnA c.67.1.4 34469 1vjw 60 1.88e+01 1fxd d.58.1.4 38991 1q1rA 431 2.02e+01 c.3.1.5 -6048 c.3.1.5 -6049 d.87.1.1 -10502 1abrB 267 2.10e+01 1abrB b.42.2.1 25563 b.42.2.1 25564 1pylA 97 2.15e+01 1jsxA 207 2.15e+01 c.66.1.20 71846 2pviA 157 2.16e+01 3pviA c.52.1.6 33302 1f3uB 171 2.18e+01 1f3uB b.65.1.1 27525 1a79A 171 2.23e+01 1a79A c.52.2.1 33340 d.75.1.1 39739 1guiA 155 2.27e+01 b.18.1.14 76351 4dpvZ 584 2.31e+01 2cas b.121.5.2 23377 1n9lA 109 2.32e+01 d.110.3.6 85468 1ewnA 219 2.35e+01 1bnkA b.46.1.2 25762 1m6dA 214 2.43e+01 d.3.1.1 84849 1dx5I 118 2.44e+01 1dx5I g.3.11.1 44302 g.3.11.1 44303 g.3.11.1 44304 1t5hX 504 2.48e+01 2arcA 164 2.52e+01 2arcA b.82.4.1 28148 1eemA 241 2.57e+01 1eemA a.45.1.1 17717 c.47.1.5 33011 1euvA 221 2.58e+01 1euvA d.3.1.7 37133 1nulA 152 2.63e+01 1nulA c.61.1.1 34011 1h9dB 134 2.64e+01 2jhbA b.54.1.1 60822 1sr4B 261 2.75e+01 1sjyA 159 2.76e+01 d.113.1.1 -10908 1vhsA 175 2.80e+01 d.108.1.1 -10794 1jeoA 180 2.85e+01 c.80.1.3 66611 1a78A 134 2.87e+01 1c1lA b.29.1.3 24212 1r72A 211 3.06e+01 unknown_sccs -215 unknown_sccs -5981 1lk5A 229 3.09e+01 unknown_sccs 73960 d.58.40.1 73961 1vig 71 3.10e+01 1vih d.51.1.1 38806 1svpA 161 3.15e+01 1svpA b.47.1.3 26384 1rgyA 360 3.17e+01 e.3.1.1 -11768 1j5xA 342 3.23e+01 c.80.1.1 71591 1is1A 185 3.26e+01 d.67.3.1 83704 1ewkA 490 3.28e+01 1ewkA c.93.1.1 35712 1gefA 123 3.31e+01 1gefA c.52.1.18 60465 1c75A 71 3.34e+01 451c a.3.1.1 15796 1s72Y 241 3.37e+01 1jj2X 240 3.45e+01 1ffkV c.9.2.1 63109 1ktaA 365 3.45e+01 e.17.1.1 77533 1rpyA 114 3.54e+01 d.93.1.1 -10636 1iv3A 152 3.59e+01 d.79.5.1 76828 1i52A 236 3.59e+01 1i52A c.68.1.13 61767 1hwxA 501 3.60e+01 1hwyA c.2.1.7 30250 c.58.1.1 33898 1r8nA 185 3.69e+01 1k3eA 156 3.75e+01 d.198.1.1 68103 1pk6A 133 3.83e+01 b.22.1.1 -3287 1uspA 139 3.84e+01 d.227.1.1 -11179 1nc7A 138 3.84e+01 b.123.1.1 85549 1bg6 359 3.89e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1gvnB 287 4.00e+01 c.37.1.21 76354